Acanthisitta chloris (rifleman): 103798146 Help Entry 103798146         CDS       T08456                                  Symbol USH2A Name (RefSeq) usherin   KO K19636   usherin Organism achl  Acanthisitta chloris (rifleman) Brite KEGG Orthology (KO) [BR:achl00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    03037 Cilium and associated proteins [BR:achl03037]     103798146 (USH2A) Cilium and associated proteins [BR:achl03037]  Primary cilia and associated proteins   USH complex and associated proteins    103798146 (USH2A) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  fn3 EGF_laminin Laminin_G_2 Ig_DSCAM-DSCAML_C Pur_ac_phosph_N Laminin_G_1 ChitinaseA_N EGF_LMN_ATRN Laminin_G_3 Fn3_VIN3 Fn3-I_PB4 Motif Other DBs NCBI-GeneID:  103798146 NCBI-ProteinID:  XP_009068640 LinkDB All DBs Position Unknown AA seq 2658 aa AA seqDB search IGGQCNCKRHVSGRQCNQCQEGFYNLQQSNPDGCSPCNCNTSGTVNGDITCHQNSGQCKC KANVIGLRCDSCNFGFKALRYSNEDGCEPCWCNSHGSVNQFCNPLSGQCNCKERVKGLHC DICMDNFYGLDVTGCKACECNAAGSFSGTVCDATTGQCACKPNIGGRQCNECLDGYRKVQ KNHSFVCLPCNCDKAGTVNGSLLCDKSTGQCPCKAGVTGLQCSQCTLHMYNLSMSNLLGC QRCDCDALGTLAGTVCDHVSGQCVCLPQRQGRRCDECKPGFYFSPSGVTGCLPCLCHTAG SVNQICDKLTGQCSCQDASVTGQTCERCKELFFGFDSVTGRCQHCNCHPAGAISGTCHVV TGQCVCKQFVTGLKCDNCVPDASNLDADNLFGCSKTPFQQPPPTGDVLNSSVISLSWSSP DSPNSNRLIYQLYRDEEEIYTTEDYHPYSVQNFTDTMLAPYTFYSYSIQASNVHGFTRSA SVTYRTKSGTPVGSLDLNPVFPVSHHSVLLYWTSISNDSGPIEKYILTCTSLVDLQPCGQ YEGLKTSAIIWNLVPFTKYVFSVQACTSGGCLKSQPVTVVTAQAPPEGLHPPTVETISST EMAVEWSPPEEPNGIIIRYELYMRKKLKPSGNFLSPEIRVFQSSGWLSPQPVVESRNENA LAPPQTSTTVIDLEPFTEYEFYVLAVNMAGSVSSDWVSGQTGESAPVFMPSPSVFPLSPY SLNVSWEKPEDNLARGEVMGYSVSLMTEQKSFPQVLLLVLHIAEAHELSYVATGLKPYRT YNFTVTLCNQIGCVTSEPGMGQTLAAAPRKLSAPHVEGINSTMVKINWSEPEELNGPSPI YQVERMDSSLATLSTEVMKGIRFPGNGYYRFASSTLPSNTYFTGIKVKFRTQEPDGLIFF SASPGNQEEFIALQLRNGRPYFLFDPQGSAVAVTPTNDGGKEYNDNSWHQIIATRIQALG NITVDGQYTGSSLATSGSTIIGENTGVFVGGLPQGYTIVRKDIIVQKGFVGCLSDIFLKT VHTPYENWESLNWQNAEEQNNVYHIWEGCPIVLSEGAHFLGRGFLELHSGVFSGGVEFEI SFKFRTDQLNGLLLFVYNKDGPDYLAIELKSGILNIFFKTGIVFTQMDLWLGLSYCDGKW NEVTLNKEGSVISASMNELREQVLKPHVQELKINSPIYVGGIPPKIRSFYKDLGLQKGFG GCMKDVKFTRGAVVNLASVSSSAVRVNLDGCLSTDSAVNCRGNDSILVYRGKEQSVYERG LQPFTEYLYRVVALNEGGSVSSAWSRIRTRESVPQNVPTPSRVHSINGYSIEVTWDKPAG VIGVIEKYILKAYEADGPHVPITSAELADASMLTGILTGLHPFTNYAVTLTACTLAGCTE SSHALNISTPQEAPEDVQSPIAISFPTFLLMSWSPPKTPNGIITQYTLYMNGVPIYSGNE TKYVVKDLAVFTPHQFLLTACTLAGCTNSSQVTLFTAQLPPSHVDAPVLTVLDSRTIHVQ WKEPVEVNGILDRYILYIANNEQNFTNWNVICNSTELFLDFTIPQLFPGTEYLIKLAACT GGGCSISEASRAVTDESTPEGVPAPKAQSYSPDSFNISWTKPEYPNGIITSYGLYMDGVL LQNSSQLSCYAYGLAPWSLHSFRVQACNAKGCALGPLVEARTMEASPEGVVDVFTAIDGS REVQLKWLAPNKPNGKLTYTVLVTGLFYADQDNANYSIVNDTRMLSSSKEFNVWVPIKGL IPFSNYTVQVNASNSQGSLISDAITIVMPPGAPDGVMPPRLSSATPTSLQVVWSTPVRNN APGTPSYQLQMRRRHSAGDILDLLPSPTASLQHSVGDLQPYTKYEMRVVASNGYGNACSN WTSMTTAEDKPGPLDPPLLLNITARAAGITWQHPLKPNGIITHYNIYKSGQLHATVPGTR SNFTVEDLHPYTVYVFQVEGCTSKGCSLSPATPEIQTLPDAPEDIPAPELYSDTPTSVVI SWQPPAHPNGLVENVTIERRVKGTEQVSTVVSLPLSQSMSYIDQSTALSPWQKFEYRVLM STLHGGTNSSSWSEVTTRPSRPAGVQPPDAEALGPYSVKVSWKPPLIQNGEILNYEIRMP DPRIVITGNPSSRLSHTVTNLTPYTNYSVTIIACTGGDGFLGGCTESLPTRVTTSSTVPQ SVSPLSVTPISESFIAISWQPPLRPNGPHLRYELLRRKIQQPLASNPPEDLNLWHNIYSG TQWFYEDKGLSRYTTYEYKLIVHNEVGYTSSEAVIATTLAGLPEKGSILNAHAVNHTAVE VEWSKPTLQDLQGDVVYYTLFLNSTDERRSLRIQADVNSIVIGDLHPNTEYQIFSQVFNG VHSINSEAVHVTTSDGEPEGMFPPEVVIINSTAVRVIWTSPSNPNGVVTEYSVYVNNKQY KTGMNEPGSFLLADLSPFTVYDIQIEACTVYACVRSNGTQITTVEDEPKQLSAPIIHIIG SRSLRINWASPEQPNGIILGYELLRKAWQKCTSSKTPRSSKSNRMCISLECKKHENICGE MCYHPELKVCCNGILHDSKPGFQCCEDKYIPFILNSPGVCCGGQIHAVQPKHQCCGGYYT RVLVGEVCCPNKEENRVSVGIGDSCCQGMPYSTSGNQICCGGSLHDSFNQQCCGGRVISM DLICCGDEKEGTAYRPLT NT seq 7975 nt NT seq  +upstreamnt  +downstreamnt attggaggccagtgtaattgtaagagacatgtgtctggcagacaatgcaatcagtgccag gaaggattctacaatctgcaacagtcaaaccctgatggctgcagtccctgtaactgtaat acctctgggacagtcaatggagatattacctgtcaccaaaattcaggacagtgcaagtgc aaagcaaatgttattggtcttaggtgtgatagttgcaattttggatttaaagctctcaga tattctaatgaagatggatgtgagccttgttggtgcaacagccacggctcagtgaaccaa ttttgcaaccctctctctgggcagtgcaattgtaaagagcgagtgaaagggcttcactgt gacatctgcatggacaacttttatgggttggatgtaactggttgtaaggcttgtgaatgt aatgctgcagggtcgttttctggaactgtgtgcgatgccacaacagggcaatgtgcatgt aaaccaaatattggaggaagacaatgcaacgaatgcctggatggctaccgcaaagtacag aaaaatcattcctttgtttgtctgccgtgtaactgtgataaggcaggtactgtcaacggc tctctgctttgtgacaaatcaacaggacagtgtccatgcaaagctggtgtaactggcctt cagtgcagtcagtgcacgcttcatatgtacaacctcagcatgagcaacctccttggctgc cagcgttgcgactgtgacgctctgggcacgttggcaggaacagtttgtgaccacgtttct ggacagtgtgtctgtttgcctcagcgtcaggggagaaggtgtgatgagtgtaaaccaggt ttttacttttctccatccggtgtcactggctgtctgccatgcctgtgccacacagctggt tcagtgaatcagatctgtgataaactaactggccaatgtagttgccaagatgcctctgta acaggacagacatgtgaacgttgcaaagaacttttttttgggtttgactctgtcacaggg agatgtcagcactgtaattgtcatcctgcaggagccattagtgggacttgtcatgttgtt actgggcagtgtgtttgtaaacaatttgtaactggcttgaaatgtgacaactgtgttccc gatgctagtaatttggatgccgacaacctatttggctgcagtaaaactcctttccagcaa cctcctcctacaggagacgttctcaattcttctgttatcagtctttcatggagttctcct gactctccaaattctaataggcttatttaccagttgtatagggatgaggaagaaatttat acaaccgaagactaccatccttatagtgttcagaacttcactgataccatgttagctcca tacaccttctattcctattccatccaagccagcaatgttcatggttttacaagaagtgcc tcagtgacatatagaacaaaatctgggacacctgtaggaagcttggatttaaatcctgtc tttcctgttagtcaccactctgttttactttactggacaagcatctctaatgactctggg cccatagagaagtacattttgacatgtactagcttggttgatcttcagccttgtggtcag tatgagggcttaaagacttcagcaattatttggaatctcgttccatttacaaagtatgtt ttttctgtgcaagcttgtactagtggaggctgcttaaagagccagccagtaacagtagtt actgcacaagctcctccagaagggctgcacccaccaacggtagaaactatcagctctaca gaaatggctgtggaatggtcaccacctgaggaaccaaatggtataattataagatatgaa ctttacatgagaaaaaaattaaaaccatctgggaactttctttctcctgaaattcgtgtt ttccaaagcagtggatggctcagtcctcaaccagttgtggaatctcgtaatgaaaatgcc ctggctccaccgcaaaccagtaccacagtcattgatctggaaccattcacagagtatgaa ttttatgtgctagcagtaaacatggcaggtagtgtatcttcagactgggtatcaggacaa acaggagagtcagccccagtattcatgccatctccatcagtattccctctttcaccatat tccctcaatgtatcatgggaaaaacctgaagataatttagcaagaggtgaagtaatggga tacagtgtcagtttgatgactgaacagaagtcctttccccaggtattattgttagttttg cacatagctgaggctcacgagctctcctatgtagcaacgggattgaaaccttacaggaca tacaactttactgttactctctgcaatcaaattggttgtgtaaccagtgagccaggcatg gggcaaaccttggcagctgctccaagaaaacttagtgcccctcatgttgaaggaataaac agcacaatggtaaagataaattggagtgaacctgaagagcttaatgggccttctcccatc taccaggtggaaaggatggattcatctttagctactttgagtacagaagtaatgaaaggg atccgtttcccaggaaatggatattacagatttgctagttccacactgcctagcaatact tactttacaggtattaaagtgaaatttagaacccaggagcctgatggtttgatttttttc tctgcatcacctggcaatcaggaggaattcattgcactgcagctgaggaatggacgtcct tactttctttttgatccacagggatctgcggtagcagtcactccaactaatgatggtgga aaagagtacaatgataacagttggcaccaaataattgctacaagaattcaagcactggga aatatcaccgtggatgggcagtacacaggttcttccttagcaactagtggcagtaccatt attggcgagaatacaggagtttttgttggaggacttccgcagggttatactattgtaaga aaggatataatagtccagaaaggatttgtggggtgtctcagtgacatctttttgaaaaca gtgcatactccctatgaaaattgggaatctttgaactggcagaatgctgaagagcaaaac aatgtttatcacatttgggaaggatgccccattgtcctctcagaaggagcacattttctt ggcagagggtttctggagttgcattcaggtgttttcagtggtggagtggaatttgagatc tcattcaaattcagaacagatcaactgaatggattgcttttgtttgtttacaataaagat ggcccagattatcttgcaattgaactgaaaagtggaatattgaacatcttttttaaaact ggcattgtctttacacaaatggatctctggttgggactgtcttattgtgatggaaagtgg aatgaagtcaccttgaacaaggagggctctgtgatttcagcaagtatgaatgaactcaga gagcaggtgctcaaaccccatgttcaggagctgaaaataaactcacctatctatgtagga ggaatcccacccaagattcggagtttttataaagatctgggattacaaaaaggtttcggt ggttgcatgaaggatgttaaatttacacgaggtgctgtcgttaacttggcatctgtgtcc agcagtgctgtcagagtcaatctggacggatgcctatcaactgacagtgctgttaactgc aggggaaatgactccatcctagtgtaccgaggaaaagagcagagtgtttatgagcgtggt ctacaaccatttacagaatacctctaccgggtggttgccttaaatgaaggagggtcagta tctagtgcatggagccgcattcgtacgagagaatcagttccacaaaatgtgccaactccc tcaagagttcacagtataaatggttacagcattgaggtcacctgggacaaaccagctggg gtcataggtgtaattgagaagtacattttgaaagcatatgaagcggatggtccccatgta cccatcactagtgctgagcttgctgatgctagtatgctcacaggcatattgacaggcttg catcccttcacaaactatgctgtaaccctaactgcttgcactttggctggctgtactgag agctcgcatgcattgaacatctccactccacaagaagcccctgaagatgtgcaatcaccc atagcaatatcctttcccacgttcttgttgatgagctggagtccaccgaaaacaccaaat ggtattattacccaatatactttatatatgaatggagtaccaatttactctggaaatgaa actaaatacgttgtaaaagatttagcagtttttacgccgcaccagtttctgctcactgca tgcacgcttgctggctgtacaaacagttcccaggtcaccttgtttacagcacagctgcca ccatctcatgtagatgccccggtcctgacggttttggattctagaacgatacatgtgcaa tggaaagaaccagtagaagtaaatggaatcctagatcgctatattctttatattgccaac aatgagcagaattttacaaattggaatgtaatctgtaacagcacagaactttttctggat tttactattccgcagcttttcccgggtactgaatacctcataaaactagctgcttgcact ggaggtggatgttcaataagcgaagctagcagagctgtaacagacgagagtacaccagaa ggtgttcctgctccaaaagcccagtcatattcacctgactcctttaacatctcatggact aagcctgagtatccgaatggtattattactagctatggattgtatatggatggtgttctg ctgcaaaattcatcacagctaagttgttatgcttatggacttgctccttggagtctgcat tccttcagagtccaggcatgtaatgcaaaaggttgtgctttgggtccattggtggaagct cggaccatggaagcttcccctgagggagtggttgatgtatttactgctattgatggatcc agagaagttcaattaaagtggcttgccccaaataaacctaatggaaaactgacctacaca gtccttgttacaggtctcttctatgctgatcaagataacgctaattattctattgtaaat gatactcggatgttaagcagcagcaaggaattcaatgtatgggtacccattaaaggcttg attccattttctaactacacagtgcaagtgaatgcatccaacagccagggcagcttgata agtgatgctataacaatagtcatgcctccaggagctccagatggcgtgatgcctccaagg ctttcatctgccactccgaccagtcttcaggttgtctggtctacaccagttcgcaacaac gccccaggcacacccagctaccaactccagatgcggcggagacattctgctggtgacatt ttagatttgcttcccagccctactgcttccttacaacacagtgttggagaccttcagcca tacactaagtatgagatgagagtggttgcctccaatggttatggcaatgcttgtagcaac tggacttcaatgactacagcagaggacaaacctggacctttagatccaccacttctattg aacattacagcaagggcagcaggcatcacatggcagcatcctttaaagccaaatggcatt atcactcattataatatttataaaagtggccaactgcatgctaccgtgccaggaactaga tctaacttcaccgtagaagacttgcatccttacactgtctatgtgtttcaggtagaagga tgcacttctaaaggatgctctctttcacctgcaaccccagaaatacaaactcttccagat gcacctgaggatattcctgctccagagctctactctgatactccaacttctgtggtcata tcctggcaaccacctgctcacccaaatggtttggtggaaaatgtgacaatagaaagaagg gtgaaaggaacagaacaagtatcaactgtggtgtctcttcctctcagtcagtccatgagc tacattgaccagagcactgccctgagcccttggcagaaatttgaatacagagtgctaatg agcactcttcatggaggcacgaacagcagttcctggtcagaagttaccactagaccatca agacctgctggtgtccagccacctgatgcagaagcattgggaccatattcagttaaggtc tcatggaaacctcctctgatacagaatggtgaaatccttaactatgagattcgtatgcct gatccacgaattgtcattactgggaacccttcatcaaggttaagtcatacggtgactaac cttacaccctatacaaactactcagtcactataatagcctgtactggaggtgatggcttt ctaggaggctgcacagagagtttgcctacaagagtgactacctcttcaacagttcctcag agtgttagtccgttgtctgtgactccaatcagtgagtcctttattgccatttcttggcaa ccaccactaaggcccaatggtcctcatctgagatatgagctcctgagacgtaaaatccag caaccacttgcatcaaatccccctgaagatttaaatctgtggcacaatatttactcagga actcagtggttttatgaagataagggtcttagcaggtacacaacatatgagtacaagctc atagtgcacaacgaggtgggatatacatcaagtgaagcagtgatagctactacattagca ggattaccagagaaaggaagtatcctcaatgcccatgctgttaatcatactgctgtagaa gtggaatggtcaaaaccaacactacaggatttgcaaggagatgttgtatattatactctc ttcttgaattccactgatgagagaagatctctaaggatccaggctgatgtaaactctata gtcattggtgatttgcatcccaacacagagtatcagatattttctcaagtttttaatgga gtccacagcatcaacagtgaagctgtacatgtgactacctcagatggagagcctgagggc atgttccctccagaggttgtcatcatcaacagtacagctgtacgtgtcatctggacatcg ccttcaaacccgaatggtgttgtcacagagtactctgtctatgtaaataataagcagtac aagactggaatgaacgagccggggtcctttcttttagcagatttgtctccattcaccgta tatgatatacagattgaagcctgcacagtgtatgcctgcgtgagaagcaatgggacccag attacaactgtggaagatgagccaaagcagctgtcagcacccattattcacataattggc tcaagatctcttagaatcaactgggcatcaccagaacagccaaatggcattatcctagga tatgaactcttacgtaaagcatggcagaagtgtacctcatcaaagactccaaggagcagc aaaagtaacagaatgtgcatctcattagaatgtaaaaagcatgaaaatatctgtggagaa atgtgttatcatccagagttgaaggtatgttgtaatgggattctgcacgacagtaaacct ggcttccaatgctgcgaggacaagtacattccatttattcttaattctccaggggtttgc tgtggtggtcagatacacgctgtgcaaccaaaacatcagtgctgtggtggttattacact agagttttagtaggagaagtatgctgccctaacaaagaggaaaacagagtttcagttgga attggtgactcgtgctgccagggaatgccttactccacctcgggcaatcaaatctgctgt ggtggatccctgcatgacagtttcaaccagcagtgctgtggtggaagagtcataagcatg gacttgatctgttgtggtgacgaaaaagaagggactgcatacagacctctcacgg

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