Acanthisitta chloris (rifleman): 103799900
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Entry
103799900 CDS
T08456
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
achl
Acanthisitta chloris (rifleman)
Pathway
achl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
achl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103799900 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
achl03021
]
103799900 (PCF11)
03019 Messenger RNA biogenesis [BR:
achl03019
]
103799900 (PCF11)
Transcription machinery [BR:
achl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103799900 (PCF11)
Messenger RNA biogenesis [BR:
achl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103799900 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
CID
zf_PCFS4
SHOCT
DNA_pol3_a_NI
DUF6980
Motif
Other DBs
NCBI-GeneID:
103799900
NCBI-ProteinID:
XP_009070502
LinkDB
All DBs
Position
Unknown
AA seq
1643 aa
AA seq
DB search
APASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDD
IFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESSAPTSAVTSGA
STPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLVTSLKCKKGSS
TIASVPAPSKQHMSPTPHMTVKPPHQTSVQSEKNKLSPSPPLHDIKIANRDPRLNRMSQH
SSHSKDQSHRKEFALNVSGQSDSKASKTTQAEKQNSAKPEKSKASEKTQKKELDQSKAKS
KSPSPLKNKLPDTKDSKSQECESTKVSEISKRDPRLKRHLQDKSEGKEEEVKEKRRNTEK
KEKEEHKTGEHRPVGSRNKVINGAVQKQDTTAEESEKQSGKQGRSSSRKRSRSRSPKARS
PSTHSPKRRERRSPKRRLRSLSPTSTTPKIGKIRQIGSKQSHAEEGTQAAREERNSSKRS
VKQEVRDPRRVKKAQEERPPETASQHSVKASPDPKENAENWQGSKSGKRWKSGWEENKNS
QQNEEHQALGKSPHQRHRENWPAGKGILSLRAPKQQHRLSVDANLQIPKELTSASKRELL
KKANDRLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCSVWDGPAEEKCGLKKKPLLSDAE
LTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHIPDALLSGIECEQAKAKRGAQFDRKE
PFAERSRRHSPVSGTTRPFADNLSPLESRRRLEEQSATKGARGSQNFDPYDSWGESDEFR
DALRQQGKSTAEFQKIDGDTVCRFDNREERQLLGQAGVREEPRSPFSERFKRARYEDPEK
APFTESPGSRFAGVEAKQRISALMEDRPLFDGSPRQAAARVGVDGSGSPFVDGPAAGSSS
RIDGPPGQAAMRFEGPLVGAGAAQFDGPLGGTGGGGALRFDGPPGQLAGALRFEGPPGQV
GGGGPLRFEGPLGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFEGPHGQPM
GPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFDGPHLQPLGPRGQPAGGLRFDGPHGQPM
GPHGPSGGGLRFEGPHGPSGGGLRLEGPHGQPGVGPRLIDGPVHQGAGGLRFDSPLGRAG
PRFDGCHAAGFDGQPGQLSILQRFDGIHGQPGPRFERAPGQQVQARFETAIPQRFDGPHQ
PASRFDLPLGLQGARFENVANHPASRLEMSPYGQGGPFVDHPGQGYNGPAHGMQFQRPDL
FDGSPGPNFNGPAGPGAQNFPLRAAGHYFDEKGLQGPQYGSFNNMPMGSNQVSLMSAQPG
PYGQGQQYLPGPGSFVQNPAGGALPHSYPDNHLGQLDVNELFAKLLKTGILKLSKTDSTS
AQASETSAQPAAEEEDDDQNEDQNVPDLTNFIVEELRQRYDSVINRLYTGIQCYSCGMRF
TTSQTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFE
KAHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVD
EKIYHPSCYEDYQNTSSFDCTPSPSKTPAENPLNIMLDIVKQETEESSDSPKIKEEPDDT
PPACAEESTPASTDIKTEPEESV
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
gctcctgcatcagagaagctccccgttatgtacctaatggattccattgtcaagaatgtg
ggaagagagtatctcactgcatttactaaaaacctagttgcaacatttatttgtgtattt
gaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccacatgggatgat
atttttcctttgaagaaactgtatgcacttgatgtcagagtcaactcattagatcctgcc
tggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtgaatcctaag
tttttaaataaatcgccagaggaatcttctgcacctacctctgctgtcacttctggtgcc
tctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaactgataagg
cagcaattgcttgcaaagcaaaagcagttgttagaacttcagcaaaaaaagttagagctg
gagctggaacagactaaagcacagttggtgacatctttgaagtgcaaaaagggatcatct
actatagcttctgttccagcaccttccaagcaacacatgtctcccacacctcatatgaca
gttaaacctcctcatcagacttctgtgcaatctgagaaaaacaaactatccccaagtcct
ccacttcacgatatcaaaatagcaaacagggatcctcgacttaataggatgagtcaacat
tcctctcattctaaagaccagtctcataggaaagaatttgcactgaacgtatctggtcag
tctgattccaaggcaagcaaaacaacacaggctgaaaaacagaactcagcaaagccagaa
aaatcaaaagcaagtgaaaaaacacagaagaaagagcttgaccagtccaaagcaaaatct
aaatcaccatcccctttaaaaaataagctccccgatactaaagacagcaaaagccaggaa
tgtgaaagcactaaagtgtctgaaattagtaaacgggatccaaggctgaaaagacatctt
caggataagtcagagggcaaggaagaggaggtcaaagaaaagaggagaaatacagagaaa
aaagagaaagaggagcataagacaggtgaacatagaccagtagggagcagaaataaagtg
attaatggtgctgttcagaaacaagatacgactgcagaggagtcagaaaaacagagtgga
aaacaagggagatcaagtagtagaaaacgttcacggtcgcgctctcctaaggcacggtca
ccatctacacattctccaaaaagaagagagaggaggtcgcctaaaagaagacttaggagt
ttatctcctacttcaaccactcctaaaattggaaagatacgtcagataggctctaagcag
tctcacgctgaagaaggcacacaggcagcaagggaagaaagaaattcgagtaagagaagt
gttaaacaagaggtgcgagatccaaggagagtgaaaaaagcccaagaagaaagaccccca
gaaacagccagccagcattctgtgaaagcctctccagacccaaaggagaatgcagaaaac
tggcaaggatccaaatcaggcaagaggtggaaatctggttgggaagaaaataaaaactca
cagcagaatgaagaacaccaagcacttggtaaatcccctcaccaaaggcaccgggaaaac
tggcctgctggtaaaggaattttatcacttagagcaccaaagcagcagcaccggttaagt
gtggatgccaatttacagattcccaaagaattaacatctgcaagtaagagggaattactt
aagaaggccaatgaccgcttaacgtctggtgaaataacacaagatgagttcctcatggta
gctcatcagatccgacagctgtttcagtatcaggaaggaaagcacagatgtagtgtctgg
gatggtcctgcagaggaaaaatgtggtttgaaaaagaaacctcttctatcagatgcagaa
ttaacatattatgaacataaagctaaactgaaaaggacacaagttcagcattcgttgtca
aggcttgatctgttggatcctgatgatattttggattatcatatacctgatgcattgctt
tctggaatagaatgtgagcaagcaaaagccaagcgtggagcacagtttgaccgaaaagaa
ccatttgcagaaagatcaaggagacactctcctgtaagtggcactactagaccttttgct
gataacctgtcaccgcttgagagtcggcgaagacttgaggaacaaagtgctactaaaggg
gcaagaggttctcagaacttcgatccttatgacagctggggagaatcggatgaatttaga
gatgctctcagacaacaggggaaaagcacagcagagttccagaaaatagatggagataca
gtctgcaggtttgataatcgtgaagaaagacagttgcttgggcaagctggtgttcgagag
gaaccaagatcaccgttcagtgagcgtttcaaaagagctaggtatgaagatccagagaaa
gcaccgtttacggaaagtccaggatcaagatttgcaggcgttgaagcaaagcagaggata
agtgcactaatggaagacagacctctctttgatggctcacctagacaagctgctgcaagg
gttggggtagatggatcaggaagtccttttgttgatggtcctgctgctggctcaagttcc
agaattgatgggccacctggacaggctgccatgagatttgaggggcctttggtgggggca
ggtgctgctcagtttgatggaccactgggaggaacagggggaggtggagccctaagattt
gatgggccaccagggcagctggcaggggccctgaggtttgagggaccaccaggacaggtt
ggtggaggaggtccactgaggtttgagggacctctggggcctttgcggttcgagggacct
gcagggcagcctgtaggtggtcctagatttgaaggacctggagttggtctcaggtttgag
ggtccccgtggtcagccttcaggtggtctcaggtttgagggacctcatggtcaacctatg
gggcctcggggtcaaccagggggtggtctcaggtttgagggaccccatggtcagcccttg
gggcctcatggtcaaccagggggtggcctcaggtttgatgggccacatttacagccattg
gggccccgtggacagcctgcaggtggcctcagatttgatgggccacatggtcagcctatg
gggccacatgggccatcaggtggtgggctcagatttgaggggccacatggaccatcaggt
ggtgggctcagattggaaggaccgcatggtcagccaggtgtaggtcctaggttgattgat
ggacctgtacaccagggagctggtggacttagatttgatagtcctctgggtcgggctggt
ccaagatttgatggctgtcatgcagctggatttgatggtcagcctggacagctgtctatc
ctgcaaagatttgatggaattcatggacagcctggtccaagattcgaaagggcaccaggc
caacaggtacaagcaagatttgaaacagccatacctcaaagatttgatggacctcaccag
ccagcctctagatttgacttgccccttggccttcagggtgcacgttttgaaaatgtagct
aaccatcctgcctcaagactagaaatgtcaccgtacggacaaggtggtccatttgtcgat
catcctggccagggctacaatggaccagctcatggaatgcagttccagagacctgatcta
tttgatggttcacctggaccaaatttcaatgggccagctggcccaggagcacagaacttc
ccattgagggcagctggacattactttgatgagaaaggtctgcagggtcctcagtatgga
agtttcaacaatatgccaatgggaagtaatcaggtttctctcatgtctgctcagccaggg
ccatatggccaaggtcagcagtatttgccaggtcctggaagttttgtccagaaccctgca
gggggagcccttccacattcatatcctgataaccaccttggacagcttgatgtcaatgaa
ttgtttgctaaactgctgaaaacagggatcctcaaattgtcaaaaacggattccacttca
gcacaagcaagtgaaacatcagcccagccagctgctgaagaggaagatgatgaccagaat
gaagatcagaatgttccagacctcactaacttcatagttgaagaacttagacagcgttac
gatagtgttataaatcgactgtacactggaattcagtgttactcatgtggaatgagattc
actacttcacagacagatgtttatgcagatcatttagactggcattaccgccagaaccgg
acagaaaaagatgttagcagaaaaattacacacaggagatggtactacagtttaacagac
tggattgaatttgaagaaatagcagatctagaggagcgtgctaagagccagttctttgaa
aaagctcatgaagaggtggtgttgaagacgcaagaagctgcaaaagagaaggagtttcag
agtgtccctgctggaccagctggagcagttgaaagctgtgaaatttgccaagagcaattt
gaacagtattgggatgaggaagaggaggagtggcacctgaaaaatgctatcagagtagat
gaaaagatttaccatccatcttgttatgaagattaccaaaatacatcatcatttgattgc
acaccatctcccagcaagactcctgcagaaaatccactaaatataatgttggacattgtt
aaacaagaaacagaagagtccagtgactcacctaaaatcaaagaagagcctgatgacacc
cctcctgcctgtgcagaagagagcacacctgcatctacagatataaaaacagaacctgag
gagtctgtttaa
DBGET
integrated database retrieval system
