Acanthisitta chloris (rifleman): 103801226
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Entry
103801226 CDS
T08456
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
achl
Acanthisitta chloris (rifleman)
Pathway
achl04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
achl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
103801226 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
achl04131
]
103801226 (VPS8)
Membrane trafficking [BR:
achl04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
103801226 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
zf-RING_Vps41
WD40_CDC20-Fz
Clathrin
TPR_Vps41
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_2
Beta-prop_WDR5
Beta-prop_WDR3_1st
zf-RING_UBOX
WDR55
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
103801226
NCBI-ProteinID:
XP_009071883
LinkDB
All DBs
Position
Unknown
AA seq
1353 aa
AA seq
DB search
IDDKEFDIPQVDTPPTLESILNETDDEEESFILEDPFLLNVDSTDTHSYDTSSVASSDSG
DRTHLKRKKKLPDSLSLHGSVIRLSLLKGISAQIVSAADKVDAGLPTAIAASNLIAVGTS
HGLALIFDQNQALRLCLGSTAVGAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKL
LRSITDAHPPGTAILHIKFTDDPTLAICNDSGGSVFELSFRRVMGVRTCESRCLFSGSKG
EVCCIEPLHAKVDLRDHPITQYSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPL
LAWHFVAVQNSVNPMLAFCRGDVVHFLLVKRDDTGAIHVTKQRQLHLHYDLINFTWINSR
TAVLLDSVEKLHVIDRQTQEELETIEISEVQLVYNSSHFKSLATGGNVSEALALVGEKAC
YQSISSCGGQIFYLGTKSVHVMTLRSWRERVDHLLKQERLMDALALAWSFYEGKAKAVVG
LTGDTSKRKAVIADRMVEILLHYTDRTLKKCPDQGKIQVMEQHFQDVVPVIVDYCLLLQR
MDLLFNQIYDKMSENSVAKGIFLECLEPYILSDKLVGITAQVMKDLLLHFQDKNRLENLE
ACIVHMDITSLDIQQVVLLCWENRLYDAMIYVYNSGMNDFISPMEKLFKVIAPPLNAGKS
LTDEQVVMGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSTEGSVDEEV
YPYVRTLLHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGC
LFTFLARQLAKPNNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEE
SRLIQMAEKAEFYQICEFMYERQLRYDKIIGCYLRDPMRKEEVFNYIHNILSMPGYSAEE
KQLVWQKALEHIEELLLLSPGKAADLAAMHFSEQIESIITDLQDQFLLFQFLRSLLDPRE
GINQDLIHLPPCITEQFIELLCQYSPDQVLETLRVLESCRLEETIQITQKHQLHEASSYL
LEKKGDIHGAFLVMLEQLQSKLLELTQDDEGSADPSLLENIEDTLMKTIALCQRNSHSLD
QQQREALWFPLLEAMMSPQKSSGSSQCRYSDSLKSLTMQVLNNMAAFIALPSILQRILQD
PVYGKGKLGEIQGLVLGMLDTFNYEQTLLETTTSLLNHDLHWSLCNLRASVTRGLTPKQD
YCCICLQQYKRRQETADEIIVFSCGHLYHSLCLLSKECGTVTKGTMRWMCYKCNSSNKGA
KLSESLSELKKGSAASLAQASSESLLDPQQIQAFDQLCRLNRGTSRLALLTELARGGDKH
GLLSMSHGDTASSSVFQNENFQLHLTPPPLVED
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
attgacgacaaagagtttgacatccctcaggtggatactcctccaacgctggagagcatc
ctgaacgagactgatgatgaagaggagtctttcattttggaggatccttttctcctgaac
gttgatagcactgacacacactcctacgacacgtcctctgtggccagctctgacagtggc
gaccgcacacacctcaagaggaagaaaaagctcccagattccctctcactccatggatca
gtgatacggctctcacttctgaaagggatttctgcccagatagtatcagcagcagacaaa
gtggatgctggcttgcccactgcaattgcagcatcaaacctgatagcagtggggacttcc
catgggctagcactgatatttgaccaaaaccaggctctgcgcctgtgcctgggcagcact
gctgttggggcccagtacggggccatctctgccctcagcatcaacaatgactgctccagg
ctcctgtgtggctttgcaaagggacagatcaccatgtgggacctggccagtgggaagctg
ctgaggtcaataacagatgctcacccaccaggaactgccattttgcacatcaagttcaca
gatgacccgacacttgccatctgcaatgacagtggaggctccgtgtttgagctgtcattt
aggagggtcatgggagtgaggacgtgtgagtctagatgtctcttcagtggctcaaaggga
gaagtttgctgtattgagccactacacgccaaagttgatctgagagaccatcccatcacc
cagtattccctgctggccatggcctccctcacaaagattctagttattggcctgaagcca
tctctgaaggtgtggatgacctttccctatggacgtatggatccttccagtgtccctctc
ctggcgtggcacttcgtggctgtgcagaactctgtgaaccctatgcttgccttttgccga
ggagacgtcgtgcatttccttctggtgaagagggatgacactggtgcaatacacgtcact
aagcagaggcagctgcatctgcactatgacctcatcaactttacttggataaactcccgg
acagcagtgctgctggacagtgtggagaagctgcacgtcatagaccgtcagacgcaggag
gagctggagaccatcgagatctcagaagttcagctggtctacaacagcagccacttcaaa
tcactggccacaggaggcaatgtcagcgaggccctggcactggtgggagagaaagcttgt
taccagtccatcagcagctgtggtggtcagatcttctaccttggaactaagtctgttcat
gtcatgacattgagaagctggagagagagagttgaccacctgctgaaacaagagcgactc
atggacgccctggccctggcctggtccttttatgaaggtaaagcaaaggctgttgtaggc
ctgactggggacacaagcaagaggaaagcagtcattgcagacaggatggttgaaatcctt
ctccattacactgatcggactttgaagaaatgtcctgaccaaggcaaaattcaggttatg
gagcagcactttcaggatgtggtgcctgtcatagtggattactgtctcctgctccagcgc
atggatctattgtttaaccagatatatgataagatgagcgagaattccgtggccaaaggc
atctttctggaatgcttggagccatatatcctaagtgataagctggtgggaatcacagct
caagtgatgaaagacttgctgcttcacttccaagacaagaacaggttggaaaatttggaa
gcctgcattgtgcatatggatatcaccagcctagacatccagcaggttgttctcctgtgc
tgggaaaaccgtctctatgatgccatgatctacgtctacaacagtggcatgaacgacttc
atcagccccatggagaagctgttcaaagtcattgctcctccactgaatgctgggaagtct
ctcacagatgagcaggtggtaatgggcaacaagctgcttgtgtatataagctgctgcttg
gcaggccgagcatatccactgggtgacattcctgaagacctggtacctctggtgaaaaat
caggtgtttgagttcctcatccggctgcactcgaccgaggggtctgtggatgaggaggtt
tatccttacgttcggacgctgctgcacttcgacacgagggagtttcttaatgttcttgct
ctgacttttgaagactttaagaatgacaagcaagctgtggagtatcagcagagaatcgtg
gacatccttctgaaagtcatggtggagaactctgacttcaccccatcccaggtgggctgt
ctctttaccttccttgcccgtcagctcgccaagcccaacaacaccttgtttgtcaacagg
acactctttgaccaggtgctggagttcctgtgcagcccggatgacgactcgcgccattcc
gagaggcagcaggtcctcctggagctgctccaggctggggggatagtgcagtttgaagag
agtcgactcatccaaatggcagagaaagctgagttctaccagatctgtgagttcatgtac
gagcgacagcttcgctatgacaaaatcatcggctgttacctgcgtgatccgatgaggaag
gaagaagttttcaactatattcacaacatcctgtccatgcctggctacagtgctgaagaa
aagcagttggtatggcagaaagctttggaacacatagaggagctgctgctgctgagccca
ggcaaagcagctgacctggcagccatgcacttcagtgagcagattgagagcatcattaca
gacctgcaggaccagttcttgctcttccagttcctgaggagtctccttgatccaagggaa
ggcattaaccaagacctgatccatttaccaccctgcatcactgagcagttcatcgagctg
ctgtgtcagtacagcccagaccaggttttggagacactcagagttctggaatcctgcaga
ctggaagaaactatccagataacccagaaacatcagctccatgaagcttcctcctatttg
ctggagaagaagggagatatacatggtgcctttctggtcatgcttgagcaattgcagagc
aagctgctggagcttactcaggatgatgaaggctcagctgatccctccttgctggaaaac
attgaagacaccttaatgaaaacaattgccctttgccagagaaattcacacagtctagac
cagcagcagcgagaggccctctggtttcccctgctggaggcaatgatgtccccacagaaa
tcctctgggtcctcacagtgccgatactctgactctttgaagagtttgacaatgcaagtg
ctgaacaacatggctgcatttatcgctctcccctccatcctgcagagaattctccaggat
ccagtttatggcaaagggaaacttggagaaattcaagggcttgtcctggggatgctggac
acttttaactatgaacaaacccttctggagacaactactagcctgttaaaccacgacctt
cactggtccctgtgcaacctgagagcctctgtcaccagagggctcaccccaaagcaggat
tactgctgcatctgcctccagcagtacaaaaggaggcaagaaactgccgatgaaatcatt
gtgttcagctgtggccacttgtaccattcactgtgcctgctgagtaaggagtgtgggaca
gtcaccaagggcacgatgaggtggatgtgctataaatgcaactcgagtaataagggagcc
aaactgagcgagagcttgtcagagctgaagaaagggagtgcagcatccctggcacaggcg
agttcagagtcgctgttggaccctcagcaaatccaagcgtttgaccagctgtgccgactg
aaccgtgggacgtcccggctggctctcctgacggaactggcccgtggtggggacaagcac
gggctgctcagcatgtcccatggagacacagcctccagcagtgtcttccagaacgagaac
ttccagctccacctgaccccccctccgctggttgaagactag
DBGET
integrated database retrieval system
