Acanthisitta chloris (rifleman): 103803248
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Entry
103803248 CDS
T08456
Symbol
EDC4
Name
(RefSeq) LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
achl
Acanthisitta chloris (rifleman)
Pathway
achl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
achl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103803248 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
achl03019
]
103803248 (EDC4)
Messenger RNA biogenesis [BR:
achl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103803248 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
103803248 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_HPS5
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
WDR55
RnlA-toxin_DBD
Motif
Other DBs
NCBI-GeneID:
103803248
NCBI-ProteinID:
XP_009074038
LinkDB
All DBs
Position
Unknown
AA seq
1371 aa
AA seq
DB search
SVNENQRPSNSYNGDLNGLLVPDPIGAADGPSLAKPVHRSISLGALQEKQVICLSGDDSS
TCIVISAKDVEIVASSDSSITSKARGSNKVKIQPVARYDWEQKYYYGNLIAVSNSYLAYA
IRAASNGSAMVRVLSVSTAERTLLKGFTGGVADLAFAHLNSNQLACLDEAGNLFVWRLAM
DKEKIQEEILVNIKRPDNTPLNTSRRIIWCPFIPDDNEESGEEGSQTLALLHEDRAEVWD
LDIIRTNNSSWPVEVPNIKEGFIVVKGHSTCLSEGALSPDGTVLATASHDGFVKFWQIYI
EGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQDPEVPFWRFLITGADQNRELKMWCTVSW
TCLQTVRFSPDIFSSMSILPSLKVCLDLSAEYLILSDVQRKVLYVMELMQNQEEGKAYFS
SISEFLLTHPVLSFGIQAVSRCRLRHTEVLPAEEENDNLSVEGAQGAGAVESAAGVLIKL
FCVHTKALQDVQIRFQPLHSPDTSTSMPSHGSHEEFAFPDHMADLSTEGLGSEKGSVHGS
QPDLRRIADLPVPADFLSLSNDPKPKLMTPDAFMTPSTSLQQIAVSPGSSVSSLTAVTAM
SSTSVTDASMPRPSEDLTVSPKMQLDTSLTLSSSSSSLQTSPRSHSVLIPGLPDKLTPKA
PVPVTPGNSSLALELQEVEPLVVPQASPTRERSPDVISSASTAMSQDIPEIASETLQRSF
AAAXXXXXXXXXHADSMASAASALHLLSPRNRHNSEHSHHSLDMPPVEVDRLNAPSLLET
ALTQENASSDSVVSQPWPAAPDITRETRNSMADSPRDEVEEKHKSSSYHRHSYHLLQHDS
QDASAEQSDHDDEVASLASTSGGFGAKASAQRLPVKDWKVKASPRASPKLKRKGKKDDGD
VNQSPRSSNNQVTQEFQDELMCTLRSQQRELSELRQNQMDLLQRLTDHLDAIQSSLMGHV
ERVIDSQQEQEQRRLDRVLTEGQQRNGQLQEHLSQQLSQSLSTAVCNRLERTIREEMKKA
VPQCISKSVDPTVSQLSNTIAAKLTAVEGTLKENITKLVKSKNLTDSVVRATADTLQGPI
QSAYREAFQSVVLPAFEKSCQSMFQQINDTFKQGTQEYIQQLETHLKNKKVREQEVRDPL
LNQLRQLISTFQSTTDQLASTIAASVHAEVQHQLHIMVGNMQESILAQVQRVIKGEVSLA
MKEQQAAVTSSIVQAMRSAAGTPIPSTHMDFQSQQTHILQLLQQGHLNQAFQQALTAADL
NLVLYVCETVDTQQVFGQHPCPLSQPVLLSLIQQLSSDLGTRTELKLNYLEEAVMHLDQS
DPITRDHMGSVMNQVRQKLFQFLQVEPHNTLGKPARRLMIMLQGLVTPGMT
NT seq
4118 nt
NT seq
+upstream
nt +downstream
nt
gttcggtgaatgagaaccagagaccatcaaattcgtataatggagacctgaatgggctgc
tggtgcctgatcccattggggctgcagatggaccttctttggccaagccagtgcatcgca
gcatctctctgggagccctgcaggagaaacaagtcatctgcctgtctggtgacgacagct
ccacttgcatagtgatatcagcaaaagacgtggagatagtggccagcagtgattccagca
tcaccagtaaggccagagggagtaacaaggtgaaaatacagcctgttgctagatatgact
gggagcagaagtactattatggcaatctgatagctgtttcaaactcttacctggcttatg
ccattagagctgccagtaacggctcggctatggtgcgagtgctgagcgtcagcactgcgg
agaggaccttgctgaagggattcacaggtggtgtggcagacctggcctttgctcatctca
actccaaccagctggcgtgcctggatgaggctggaaacctttttgtctggcgcctggcca
tggataaagaaaaaatccaagaggagatcctggttaacatcaagcgacctgacaataccc
cactgaacacctctcgaagaatcatctggtgccctttcatcccagatgataatgaggaga
gtggtgaagagggaagtcagacattggcgttgttgcatgaggacagagcagaggtgtggg
atttggacatcatccgaacgaacaacagctcctggccagtggaagtgcctaacatcaaag
aaggcttcattgtggtgaaaggccacagcacgtgcctgagtgagggagcactttctccag
atggaacagtgttggccacagcaagccatgatggttttgtcaaattctggcagatctata
ttgaggggcaagatgagccaaggtgtcttcatgagtggaaaccccatgatggtagacctc
tttcctgcctgctcttttgtgacaaccataaaaaacaagacccagaggttcccttctgga
ggtttctcatcacaggagctgatcagaacagagaattgaagatgtggtgcactgtgtcct
ggacctgtctgcagactgtccgcttttctcctgacatcttcagctccatgagtattcttc
ccagcttgaaagtctgtctggacctctccgctgaatatctgatactgagcgatgtgcaga
gaaaagtcttgtatgtgatggagctgatgcagaaccaagaggagggcaaggcttacttca
gctccatctcagagttcctccttacccaccctgtcctaagctttggcatccaggcagtga
gccgctgtcgcttaaggcacactgaagtgctcccagcagaggaggaaaacgacaacttga
gtgtagaaggtgctcagggcgctggggccgttgaatcagcagctggcgtgctgataaaac
tcttttgtgtgcacaccaaagccctacaggatgtgcagattagattccagcctcttcata
gccctgacacgagtacatccatgccttcccatggctctcatgaagaatttgcctttccag
accacatggctgatctaagcacagaagggttgggatctgaaaaaggatccgtgcatggct
ctcaaccagacctgcggcgtattgctgatctgcctgtgccagcagacttcctttctctct
caaacgaccccaaacccaagctgatgactccagatgcattcatgacaccaagtacatctc
tccaacagattgctgtgtctccaggcagcagtgtcagttccctgactgcagtcacagcca
tgagtagcacttctgtcacggatgcctctatgcccaggccatcagaggatttgactgtga
gccccaagatgcagctggacaccagcctcacactgagcagcagcagcagcagtctccaga
ccagtcctaggagtcattcagttcttatcccaggcctccctgacaagctaacaccaaagg
cacctgttccagtcacaccaggaaactcctctctagcactggaactgcaggaggtggaac
ccttggtggtgccccaggcttctcccacccgcgagcgctcgccagatgtcatttcctctg
cttccacagccatgtcccaagacatcccagagattgcttccgagaccttgcagcgcagct
ttgcggcggctnnnnnnnnnnnnnnnnnnnnnnnnnatcacgcagacagtatggcctctg
ctgcctcagccttgcatttgctgtctccaaggaacaggcacaattctgagcacagccacc
actctttggacatgcctccagtggaggtggacagactgaatgctccatcattactggaga
ctgctttaactcaggaaaatgcatcttctgacagtgttgtgagtcagccatggccagcag
ctcctgacataaccagagaaaccaggaatagcatggcagacagcccaagggatgaggttg
aagaaaagcacaagagctcttcctaccatcgacacagctaccacctgctgcagcatgaca
gccaggatgctagtgcagaacaaagtgaccatgatgatgaagttgcaagcttagcttcta
catcaggtggatttggtgccaaagcatctgcgcagaggctgcctgtgaaggactggaaag
tgaaggcatcccccagggcttccccaaagctgaagcggaagggcaagaaagatgatgggg
atgtgaaccagtcaccaagatcatctaacaaccaggtgacacaagagttccaggatgagc
tgatgtgcacactgaggagccaacagcgagagctctcagagctgcgccagaaccagatgg
acctgctgcagagactcacagatcacctcgatgccattcagagctccctcatgggtcacg
tggagagggtgattgactcccagcaggagcaggagcagaggagattggaccgagtgctga
cagaggggcagcagcgcaatgggcagctccaggagcatctgtcccagcagctctctcagt
ccctgtccacagctgtgtgtaaccgtctggagaggaccattcgtgaggagatgaagaagg
ctgtgccccagtgcatttccaagagtgtggaccctactgttagccagctaagtaacacca
ttgctgccaagctcactgctgttgaggggacactgaaagagaatatcaccaagctagtga
agtcaaagaaccttacagatagtgttgtgagagccacagccgataccctgcaggggccga
tccagtcagcttacagggaagcgttccagagcgttgtgctgccagcctttgagaagagct
gccagtccatgttccagcaaatcaatgacaccttcaagcagggcacacaagaatatatcc
agcagcttgagactcacttgaagaacaagaaggtacgagagcaggaggtccgggaccccc
tgctgaatcagctccgacagctcatcagcaccttccagagcaccacagatcagctggcat
ccaccatcgccgccagcgtccacgcagaggtgcagcatcagctgcacattatggtgggca
acatgcaggagtctattttggcccaggtgcagagagtcattaaaggagaagtgagtctgg
ctatgaaggagcagcaagcagctgtcacctcgagcatcgtccaggcgatgcgctcagcag
ctgggacaccaatcccctccactcacatggatttccagtcacagcagactcacatccttc
agctgctccagcagggacacctcaaccaagctttccagcaggctctaacagcagcggatc
tcaacctggttctgtatgtctgtgagactgtagatactcagcaagtgtttggacagcatc
catgcccactgtcccagcctgtgctgctctccctcattcagcagctctcctcggatttgg
gcactcgtacggaactgaagttgaattacttggaggaagcagtgatgcacctggaccaaa
gtgaccccatcacccgagaccacatggggtcagtcatgaaccaggtgcggcagaagctct
tccagttcctccaggtggaaccccataacacactgggcaagcctgcacgtcgcctcatga
tcatgctccagggcctggtcacccccggcatgacctag
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integrated database retrieval system
