Acanthisitta chloris (rifleman): 103803822
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Entry
103803822 CDS
T08456
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
achl
Acanthisitta chloris (rifleman)
Pathway
achl03013
Nucleocytoplasmic transport
achl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
achl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103803822 (UPF3A)
03015 mRNA surveillance pathway
103803822 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
achl03019
]
103803822 (UPF3A)
Messenger RNA biogenesis [BR:
achl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103803822 (UPF3A)
mRNA cycle factors
P-body specific factors
103803822 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
103803822
NCBI-ProteinID:
XP_009074647
LinkDB
All DBs
Position
Unknown
AA seq
432 aa
AA seq
DB search
REDRKAALSKVVIRRLPPCLTKEQLEEQLHPLPAHDYFEFCTADPSLYPHLYSRAYINFR
NPEDILLFRDRFDGFVFIDSKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYRK
FLESYCADEEKICANPEILLGEIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREER
RRRELEKKRLREEEKRKRREEERRKRKEVEKQKKMSEKEIRIKLLKKPEKGDELASEKHK
EKGEETDIEENKWDKSPGSGSIKSKSLESSLKELKEKSQNDSDKEQRDLERRYREKEPER
QRYRLDDGRKHRTHYEFDKFMRRNEEELKWGKGYNQDRGKKGNYNYSFTVEAVDKLGKED
KCDDMASKKERIRNKDRPAMQLYQPGVRIRTHMGPTSKTYDCSGKPFEDALDKKFEADDS
AAAASEKTEEAE
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
cgcgaggacaggaaagcggcgctgagcaaagtagttattcgacgtcttcctccttgtctg
accaaggagcaactggaggaacagctacatcctctacctgcccatgattactttgagttt
tgcactgctgaccccagcctttatcctcatctctactccagagcttacattaacttcaga
aaccctgaggacatccttctcttccgagatcgctttgatggctttgtcttcatcgacagt
aaaggtttggagtatcctgcagtggttgaatttgctccattccagaagatctcaaaaaag
aagctgaagaagaaagatgccaaagctgggagcattgaagaggatccagaatataggaaa
tttttagagagttattgtgctgatgaagagaaaatctgtgccaatcctgagattcttttg
ggagaaattgaagccaaaacaagggaactcattgctagaagaacaactccccttttggaa
tatattaaaaatagaaaattagaaaagcagagaatacgagaagagaagagagaggaacgg
aggcgaagggaactggagaagaaacgtctgagggaggaagagaaaaggaagcgcagggag
gaggaaagacgtaagaggaaagaagtggagaagcaaaagaagatgtctgaaaaagaaata
aggatcaagcttctcaagaagcctgagaaaggagatgaactggccagtgaaaagcacaaa
gagaaaggtgaagaaaccgacattgaggagaacaaatgggataaatcacctggatctggg
agtataaaatccaaatctttggagagctcactgaaagaacttaaggaaaagtcacaaaat
gatagtgacaaagagcaaagagatttggagagaagatatcgagaaaaagaacctgaaaga
caaaggtatcgattggatgatggcagaaagcatagaactcactatgagtttgacaagttt
atgagaaggaatgaagaagagctgaaatgggggaaaggatacaaccaagacagaggaaag
aaagggaactacaactacagcttcactgtggaggcagtagacaaactgggtaaagaggac
aagtgtgatgacatggcatccaaaaaggagcgcataagaaataaggatcgcccagccatg
cagctgtaccagccaggagttcgcatccgaacacacatggggcctacaagtaaaacctat
gactgcagtgggaaaccctttgaagatgctcttgataaaaagtttgaggcagatgattca
gctgcagctgcttctgagaagactgaagaagcagaataa
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