Acanthisitta chloris (rifleman): 103805678
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Entry
103805678 CDS
T08456
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
achl
Acanthisitta chloris (rifleman)
Pathway
achl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
achl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
103805678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
achl03400
]
103805678
DNA repair and recombination proteins [BR:
achl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
103805678
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PWWP
Autoind_bind
Motif
Other DBs
NCBI-GeneID:
103805678
NCBI-ProteinID:
XP_009076584
LinkDB
All DBs
Position
Unknown
AA seq
1263 aa
AA seq
DB search
MEGYPWWPCLIYNHPTEGTIVRGKGKSTRVHVQFFDDSPTRGWISIKYLRPYKGSSDGET
LKGGMFYSTKPEIKRAMVLADDAMRKNKTKRLELAVCNEPSDTEEEEEEEVEEMDESASG
HSDDCNSEEDVXXXXXXXXXXRAVKAKRRRVLDSDSDHDGSDTEFKPDAKEVASSEDASS
GVDENESSGTDTDAESVAESPIKVPSKRKRRETTKPAKRSSLGSDSSETPKRVATVSSEA
KSKLTSFSAPESFESQASACSGGTGDFAVWEHEKLDWLQEGKRKDAHRKRQSDPGYDPCT
LYVPEDYLNKCTPGMRRWWQLKSQNFDAVIFYKVGKFYELYHMDAVTGVNELGLIFMKGT
WAHSGFPETAFGRFSDVLVQKGYKVARVEQTETPEMMEARCKATAHTTRFDKVVRREICR
IITKGTQTYSIMDCDPSENHSKYLLSVKEKEDSSGQRVYGVCFVDTSVGKFYVGQFSDDR
HCSRFRTLIAHYTPVQVLYEKGNLSVDTQKILKGSLVSCIQEGLISGSQFWNASKTLKAL
LEEGYFKEKQNSENGCSLPSAIKSLTSESDSLGLTPGENSELALSALGGCVFYLKRCLID
QELLSLANFEEYVPVDIATARTVSSSSLFARTDQRMVLDGVTLMNLEVLQNGTNGTTEGT
LLERIDSCCTPFGKRLLKQWLCTPLCNPKSINDRLDAVEDLLAVPDKMSEVSEHLKKLPD
LERLLSKIHSIGSPLKSQNHPDSRAIFYEEIKYSKKKIADFLSALEGFKVMNEIVDAMEE
IASDFKSKVLKQLVTRKAKNPDGHFPDLSAELTRWDTAFDHNQARKTGVITPKAGFDPDY
DKALQDIKAVEEDLHKYLDKQRKLLGFKSVLYWGAGKNRYQMEIPESVISRNLPEEYELK
SSRKGYKRYWTKEIEKMLAAMVNAEERRDAALKDCMRRLFHNFDKNSKDWQTAVECIAVL
DVLMSLAHYSQGGDGPLCRPVILLPVDSAPPFLELKNSRHPCITKTFFGDDFIPNDIVIG
SSDEDSSSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEACRLTPIDRVFTRL
GASDRIMSGESTFFVELSETSSILQHATEHSLVLMDELGRGTATFDGTAIASAVVKELAE
KICCRTLFSTHYHSLVEDYSHNRAVRLGHMACMVENESEDPSQETITFLYKFIEGACPKS
YGFNAARLADIPEEVIQKGHRKAKEFEKTTLSLRVFRYLCQVVDGATRDANAVQKLRAMI
THL
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttatccttggtggccgtgtctcatatacaaccatccgactgaaggaacaata
gtcagaggaaaagggaaatccactcgtgtccatgtacagttttttgatgacagccctaca
aggggctggatcagtattaaatacctgaggccatacaaaggttcatcagatggggagacg
ctaaagggaggtatgttctacagtacaaagcctgaaattaagagagcaatggtactagca
gatgatgcgatgaggaaaaataaaactaagagacttgaactggcagtatgcaatgaacct
tcagacacagaggaagaagaagaggaggaagtggaggagatggatgaaagtgcatcaggc
cacagtgatgactgcaacagtgaggaggatgtgnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnaagagctgtaaaagccaagagaagaagagtgttggattctgacagtgatcacgatggc
tctgacacggagttcaagcctgatgcgaaggaagtggcaagcagtgaggacgctagtagt
ggggtagatgaaaatgaatcttctggcacagacacagatgcagagagtgttgcagaaagt
cccataaaagtcccttctaaacggaagagaagagagacgacaaagcctgccaagaggagt
agcttgggaagtgatagttctgaaacacccaaaagagtagcaacagtctcttcagaagcc
aagtctaagctgacatcgttttcagcacctgaaagttttgaatctcaagcaagtgcttgc
agtggaggcaccggtgacttcgcggtatgggagcacgagaagcttgattggctgcaggaa
gggaaaaggaaggatgcgcacaggaagcggcagagcgaccctgggtacgacccgtgtacc
ctgtatgtgcctgaggactatctcaacaagtgcacgccaggaatgcggaggtggtggcag
ctgaaaagtcagaacttcgatgctgtgattttctacaaagttggaaagttctatgagttg
taccatatggatgcagtcactggcgtgaacgagttggggctgatctttatgaaaggcact
tgggcccattcaggttttccagaaacagcgtttggcaggttctctgatgttctggtacag
aagggctacaaggttgcccgtgtggagcagacggaaactcccgaaatgatggaagcgcgc
tgcaaggccacagcccacacaaccaggtttgacaaggtggtgcgccgggaaatctgcaga
atcatcaccaaaggaactcagacttacagcattatggactgtgatccctccgagaaccac
agcaaatacctcctgtctgtcaaggaaaaggaagactcctccggacaacgtgtttacggg
gtctgcttcgttgacacgtcggtggggaagttttatgtaggccagttctccgatgaccgt
cactgctcgaggttcaggactttaatagcacattacactcccgtgcaggtactgtatgag
aaggggaacctgtctgtggacacacagaagatactgaagggctcactggtttcctgcatt
caggaagggctgatctcgggttcccagttctggaatgcatctaaaacactaaaagccctt
cttgaagaagggtatttcaaggagaaacagaactctgaaaatggatgttctctgccctct
gcaatcaaatctctgacttcagagagtgactcactgggattaactcctggtgagaacagt
gagttagctttgtcagctcttgggggatgtgtcttctatctcaaaagatgcctgattgat
caggagctgttatcgctggcaaacttcgaggagtatgtccctgtggatattgctactgcc
agaactgtgagctcaagtagcctgtttgccagaacggatcagcggatggtgctggatgga
gtcaccctgatgaacttggaagtcctgcagaacggaaccaacggaaccacagaaggtacc
ttgttggagaggattgattcttgctgcacgccgtttgggaagcggctcctgaaacagtgg
ctctgcactccactttgtaaccccaaatctatcaatgatcggttggatgccgttgaggac
ctcctggcggtgccagataaaatgtctgaagttagtgagcacctgaagaagctgcctgac
cttgaaaggctgctcagcaaaatccacagcatcggatcaccacttaaaagccagaaccac
cctgacagcagggccatcttttacgaagaaatcaaatacagcaaaaaaaagatcgctgac
tttttgtctgcactggaggggttcaaagtgatgaacgaaattgttgatgccatggaagag
attgccagtgacttcaaatctaaagtcctgaagcagctggtaacgcgcaaagccaaaaac
ccagatggccacttcccagacctgagcgcggagctgacgcgctgggacacggctttcgac
cacaaccaggcccgcaagacaggagtgatcactccaaaggcaggttttgaccctgattat
gataaagcactacaggatatcaaagctgttgaggaagatcttcacaagtacctggataag
caacgcaaactgcttggattcaagtctgtgctgtactggggggcaggcaaaaacagatac
cagatggaaataccagagagcgtcatatcgcggaatttgcccgaggaatacgagctgaag
tcaagcaggaagggatacaagcgttactggaccaaggagattgagaagatgctggctgca
atggtcaatgctgaggagcgccgggacgcggcgctcaaggactgcatgaggcgcctgttc
cacaactttgataaaaacagcaaggactggcagacagctgtggagtgcattgctgtgctg
gatgtcttgatgtcccttgctcactacagtcaaggtggtgatggaccattgtgccgacct
gtgattctgctgcctgtggatagtgctcctcccttcctggaacttaaaaactcacgccat
ccatgcattacaaaaaccttctttggggatgattttattcctaatgacatcgtgataggc
agcagtgatgaagacagcagtagtgaagcttcctgtgtgttagtgactggccccaatatg
ggtggcaaatctaccctaatgagacaggctggtctgctggttatcatggctcagctgggg
tgctacgtgcccgcggaagcctgcaggctcacaccaatcgacagagtgttcacgcggctc
ggagcctccgacaggattatgtcaggtgaaagtaccttcttcgttgaattgagtgagact
tccagcattctccagcatgcaacagagcactccctcgttctcatggatgaactgggcaga
ggcacagccacttttgatggcacagccatagcgagtgcagttgtgaaggagctggcagag
aagatctgctgtcggacactgttctccacacactaccactccctggtggaggactattcc
cacaacagagctgtgcggcttgggcacatggcatgcatggttgagaatgagagtgaagat
ccgagccaggaaacaattacgttcctgtacaagttcattgaaggagcatgcccaaagagc
tatggcttcaatgcagcgagacttgcagatattccagaagaagttattcagaagggacac
agaaaagcaaaagagtttgaaaaaacaaccctttcactgagagtatttaggtacctgtgc
caggtggtggatggtgcaacacgtgatgcaaatgctgtgcagaaactgagggcgatgatc
acccatctgtga
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