Acanthisitta chloris (rifleman): 103806239
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Entry
103806239 CDS
T08456
Symbol
RTCB
Name
(RefSeq) LOW QUALITY PROTEIN: tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
achl
Acanthisitta chloris (rifleman)
Brite
KEGG Orthology (KO) [BR:
achl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
achl03016
]
103806239 (RTCB)
Enzymes [BR:
achl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
103806239 (RTCB)
Transfer RNA biogenesis [BR:
achl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
103806239 (RTCB)
Prokaryotic type
tRNA splicing ligases
103806239 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
103806239
NCBI-ProteinID:
XP_009077169
LinkDB
All DBs
Position
Unknown
AA seq
469 aa
AA seq
DB search
GVFYVNDPLEKLMFEELRNACRGGGAGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYG
FAIGNMAAFDMSDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPV
GVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSSRAKK
RGLPQLGTLGAGNHYAEIQVVDDIYNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDA
LVAMEKAMKRDKIIVNDRQLACARIASAEGQDYLKGMAXXXXXXXXSMTFLTRQAFAKVF
NTTPDDLDMHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTG
QPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMG
IAIRVASPKLVMEEAPESYKNVTDVVNTCHEAGISKKAIKLRPIAVIKG
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
ggcgttttctacgtgaacgaccccctggagaaactcatgttcgaggagctccgtaatgcc
tgccgcggtggaggtgcaggtggcttcttgcctgctatgaaacagattgggaatgtggct
gcattacctggtattgttcataggtcaataggccttccagatgtccactctggctatgga
tttgccattggcaacatggctgcctttgatatgagtgatcccgaagcagtggtttcacca
ggtggtgtgggatttgacatcaactgtggcgtccgcttgctgcgtacgaatttggacgaa
agtgatgtgcagcctgtgaaggagcagcttgcccaagctatgtttgaccacattcctgtt
ggtgtcggctccaaaggtgtcatccccatgaatgccaaggatttggaagaggcattagag
atgggtgtggactggtctctccgagagggttatgcctgggcagaggacaaggagcactgt
gaggaatatggaagaatgctgcaggctgatcccaacaaagtctcctccagagcaaagaag
aggggcctgcctcagctggggaccctgggagctggaaatcattacgctgagatccaggtt
gtggatgacatttacaatgaatacgctgccaagaagatgggcattgaccacaaagggcag
gtgtgtgtgatgatccacagtggaagcagaggtctgggccatcaggttgccacagatgcg
ttggtggctatggaaaaagcaatgaaacgggacaaaatcatagtgaatgatcgccagctg
gcctgtgctaggattgcgtctgcagaggggcaggattacttgaagggaatggcangnnnn
nnnnnnnnnnnnnnnncttctatgacttttctaacaagacaggcctttgccaaagtcttc
aacacaaccccagatgaccttgatatgcatgttatctatgatgtgtctcacaacattgcc
aaagtggagcaacatgtggtggatggaaaggagaggactctgctggtgcacagaaaggga
tcaaccagagccttccctcctcaccaccctcttattgctgttgattatcaactgactgga
cagcctgttttgatcggtgggaccatgggcacctgtagctatgtccttactggcacagag
caaggcatgactgagacctttggaactacttgtcatggagctggtcgtgcactgtcccga
gccaaatctcgacgtaacttggacttccaagatgtgttggacaagttggctgacatgggc
attgccatccgtgttgcttctcccaaactggtcatggaagaagcaccagagtcttacaag
aacgtgactgatgtggttaacacctgtcatgaagctggcatcagcaagaaagccattaaa
ctgagacctattgctgttataaaaggctag
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