Acanthisitta chloris (rifleman): 103806766
Help
Entry
103806766 CDS
T08456
Symbol
SETX
Name
(RefSeq) LOW QUALITY PROTEIN: probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
achl
Acanthisitta chloris (rifleman)
Brite
KEGG Orthology (KO) [BR:
achl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
achl03021
]
103806766 (SETX)
Enzymes [BR:
achl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103806766 (SETX)
5.6.2.5 RNA 5'-3' helicase
103806766 (SETX)
Transcription machinery [BR:
achl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103806766 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
AAA_22
SLFN-g3_helicase
AAA_16
ResIII
ABC_tran_CTD
DUF4164
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
103806766
NCBI-ProteinID:
XP_009077724
LinkDB
All DBs
Position
Unknown
AA seq
2807 aa
AA seq
DB search
MSTCRWCTLGGADTTEFLKQYAAQRLSQEDFEGSNDDLCYCLECVVEYHKAREQFPRLHE
DLWNLETSRLVAHIEKSMQKEMGEDDELFLVDENGETQLCGYVGPDFENHLRVPLVEILK
YPYLLLHEKVSELCVEVLCRMEQSHDSFQVFEKYPGIYLFLVHPNEVIRRWAILTARNLG
KVDRDDYYDLEEVLTCLFKVIELGLFENSDIYTSSMFEKGKLILLPAHLYDTTNYKNYWL
GICMLLTVLEEQAMDSLLLGLDRQNDFMQSILHTMEKEATDESTDPFWPALHCFMVILDQ
LGSKVWGQLIDPVQAFQTIINSVSYNNEIKSIRSSFHRTKSEPESDYGDDMITCSQIVYN
YNTEKPQKDTGWKAAICPEYCPNMYEDMQTLANVLQSETGRDMRVHHSTFLWFIPFVQSL
MDLQDLGVAYIVEVIHYLCAETKDILDERIQQCDRVSEFFLLILVSIVELHRNKKCLHLL
WISSQEWVEAVVRCATLPARAFTRCTEKSSGGYCVKGSAASSLQASTSVQHSCVQLIRSL
LKEGYQLGQNALCKQYLDKLNLLLRGNLAVGWQLNVQETQELQMCLKQVIRNIKSRALSA
SMAGRNNANSPTLPTISIKQEKVCGDGCKTSVHEKDDLYPPFVIGKEGANCQENFFPRRK
NTWEEECRDAPKSSTSWTSTEGLLVDIKKEPDDLTAQEYVLPQSTLATKLHRKVQEDRNH
IVARKCNTGDQGSNSSAQCSGLRRGRELEIRDEAKPVTPTCLGAQTHLGAPEHLDSSNEK
ESNIPPSSSSEVKVDVQRVKGLKNKLQESKWLSKMSQPEKLHDLKNCSLSARTTKPEVEQ
PQVCTDFLCTSKDSYKHQGTNTGCKNEISADASSARSCKDKQETSVNSMFQSRLLPTKQV
SKETPPDCSSSSKNDPSVQEKEDDSILLLGINDTSVKKVSTEEKSISLLRSKEDTDMQTS
DQEQSHLNDLVQFDSKHQISKAFCMDKTSPNGCFPSSSENKRDTSNPAAQVRPLSVKCES
SDKLFKFSEYFKREKTSGAKKEESFVKMVSEDTTLSDSQVDRDLSKLSLAAYAKSVNFSF
ESSQESSVQYNVCNIRRKVKGAVRSSNEDQRAKSPCNADCHKNQVIVVLDSSDEEKRLSD
EEETKLKGENVCPAEQPSTSSSILDRDVKTDSKSPSTPLSLDECESQYFEFETEAEVFSA
WQDTQAYALEATQEYKQNDVTTATDSSNSGESLHDSTNEWGYEVDYIDYDTMEEGEASSI
ENSSQQKETDGTKEVTNSTSQESASKENAKGQLENFADKGTAAKVFTPDSKLPEPRASTS
TVSLAAKLALKKNSTSPQKMVAKSKLAIAIQRSPKKPPVIKPAQDKKLLPRIPEHSQPGR
SLPAVVPPKKVRQCPAPASTVERLGLKKAPRKAFDLSQRSLESVALLRNHGKAAGRVGAA
QGQRAKLIDAQNLSVKYNKKLLACQDRQFLRQTRPKKSVRVKNPAGSAEGRNKKVSKGCA
KSMKQGFELTSVEGSVREKKREETTYSFASERRFESCSGEETSTSKMPGSSGWNRKLEDS
SVPAVPMDSSTSSTALGDGKAQSSGRGSTVLPECETKTSKADGCKPDESGEDDDNLFLTQ
LDPVDMELCSQDENYQDTAIASENPEETNVAKNLQQNESSAVVKCSDKDCTEKVGKAGES
CSKHTATDHVFAKPSLLPPKIRKPSTTKIFSSASSSRNAAFSKDLENATLPPPSKSKVNA
VRPVVVWPPLPRAVPAGNQVCKTPRLSNTPQPYVSNNILQSQTRQYDNASNISRGSGRGV
CSPFLGGQQRDHSIFVNQVLKWTYDMFANFSHFGTPSVLLQSVVASVPVQFQGYNDYFDT
FFPLMMLNAFETLAQEWIENQGGREKSYCFYLQTFSADMNTAHFTAPFREADLARQLHPK
EDDLILLLFXLDTFGEESGVENHIVNHVGLVTRFSRASGYAARQKEQLTVCHLSVQTRGN
LSFFIQKQVKCVVVGSLVTTHRMFKGLLLLSRSPLAKPILNPCYNDFCPRDLTIASGSAA
LNMNEYNEDQKRAIETAYAMVKQHPGLPKICLIHGPPGTGKSKTIVGLLSRVLRENTRNE
KTARRKNSKIKPNRFLVCAPSNAAVDELMKKIIVAFKEKCQNKQEPLGNCGDIKLVRLGA
EKAINTEVRGFSLDKQVEHRMKRKPGDSDWDIQKKEEALDQKLDMLSRERAMHRCEKRES
QKLDDEIARLSKERQQLASQLKEVRGYSQKVQADIILESDIICCTLSTSGGSLLESAFSR
QGLDPFSCVIVDEAGQSCEVETLIPLIHRCTKLVLVGDPKQLPPTVKSVKAQEYGYDQSL
MARLQRHLEEQVQRKVLRSLPVVQLTVQYRMHPDICLFPSNYVYGRTLKTARAIEENRCS
SEWPFQPYLIFDVADGREERDNDSFSNPHEVKLVMELIKTIKEKRKDLGLRRIGIITPYS
AQKKKIQEQLDSVFRNNSPGEVDTVDAFQGREKDCIIVTCVRANSTKGSIGFLASLQRLN
VTITRAKFSLFILGRLQTLMDNKDWNKLIQDAQKRGAIIRTAEKNYKKDALKILKFKPAP
PSTAGTRTPPVVQTGSASSKRSELTNPGSSPQEGAASPGHAMPQGSRGPPQPPGAPAADS
RRNSRRSSAPAPTGAAAVPANPEKPRDPRLASRTEGKGKEQVVKDNNCPVQSHPGSTTQQ
GLAVSSAARDQVSRIGARDQISRTENVKKPQETIGQCNVLPTSSYSARHEGDQRGAVSKS
SSGAPSERGQKNSSEWSRDCRGLTGRPPEESPENTDPSSAKRRKIFH
NT seq
8424 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgccgatggtgcacactgggtggtgctgacaccaccgagttcctgaagcag
tatgcagctcagagattgtcccaggaagattttgaaggatccaacgatgatctctgttac
tgcctggagtgtgtggttgaataccacaaagcaagggaacaatttccaaggctgcacgag
gacttgtggaacttggaaacctcccgacttgttgcccacattgagaaatccatgcagaag
gaaatgggagaggatgatgagttgttcctagtggatgagaatggggagacacaactgtgt
ggctatgtgggcccagattttgagaatcacctgcgagtgcctcttgtagaaatactgaag
tatccatacctgctgctgcatgagaaagtcagtgagctgtgtgtagaagtgctctgtaga
atggaacaaagtcatgactcctttcaggtctttgaaaaatatccaggaatttatctcttt
ttggtacacccaaatgaagtgatccggcgctgggccatcctgacagcaaggaatttagga
aaggttgacagggatgattactatgacttagaggaggtgctgacctgtctgttcaaagtg
attgagttgggtctttttgagaattcagatatttacacctcttcaatgtttgagaagggc
aaactcatccttctgccagctcatttgtatgacacaaccaactacaagaactattggctg
gggatttgcatgttgctgacagtgttggaagaacaagctatggactccttgttactggga
ctagacagacaaaatgacttcatgcagtctatacttcacaccatggagaaggaagcaact
gatgagtccactgaccccttctggcctgccctgcattgtttcatggttattttggatcag
ctcggatcgaaggtttggggtcaactgattgatcctgtccaggcctttcaaaccatcatc
aatagtgtgagctacaacaatgaaatcaaaagtatacgcagtagctttcataggacaaaa
tctgaaccagagtcagactatggcgacgacatgattacttgcagtcagattgtgtataat
tataacacagaaaagcctcaaaaggacactggatggaaggctgccatttgtccagagtac
tgccccaacatgtatgaagatatgcaaactctggctaatgtgctgcagtctgaaactggc
agagacatgcgtgtccatcacagcacattcctctggttcatcccttttgttcagtccctg
atggacctccaggatttgggtgtagcgtatatagtggaagtgattcactacctctgcgca
gaaaccaaagatattctcgatgaaagaatccagcagtgtgacagggtctctgagtttttc
ctcctcatcttggtgtccattgttgaactgcacagaaacaaaaagtgcctgcacttgctg
tggattagctcccaggaatgggtggaagcagtggtgagatgtgctacacttccagcaaga
gcatttacaaggtgcactgaaaaatcctctggtggttactgtgtgaaaggctcagcagca
tcatctttacaagcctctacctcagtgcagcactcctgtgtgcagctgatccgcagcctc
cttaaggaaggctatcagctggggcagaatgctctctgcaagcagtacctggacaaactc
aacctcctcctgcgaggaaatctggctgtaggttggcagctgaacgtgcaggaaacccag
gaattacaaatgtgtttaaagcaagtgataagaaacataaagagcagagcactgagtgcc
tctatggctggaagaaacaatgcaaactctccaactttgcctaccatttctataaagcaa
gagaaggtgtgtggtgatgggtgcaagacaagtgtgcatgagaaggatgatctttaccca
ccgtttgtcataggaaaggaaggtgcaaattgccaggagaactttttccccagaagaaag
aacacctgggaagaggaatgtagagatgcacctaaaagttcaacatcttggacatccaca
gaaggcctcttggtggatattaaaaaggaacctgatgacttgacagctcaggaatatgtt
ttgccacagagcactttggcaacaaaactacataggaaagttcaggaagataggaatcat
attgtggcaaggaagtgcaatacaggtgatcagggctctaattccagtgcccagtgttca
ggtctcagaagaggcagagaattggaaatcagagatgaagcaaaacctgtaacaccaaca
tgtttgggtgctcagactcatcttggtgctccagaacatcttgacagctcaaatgagaag
gaaagcaatatacctcccagttcctcttcagaggttaaagtggatgtgcagagagtcaag
ggcttgaaaaacaagttacaggaaagcaaatggctctcaaaaatgtcacagccagagaaa
ctacatgacttgaaaaactgcagtttatcagcaagaactacaaaaccagaggtagagcaa
cctcaggtttgcactgactttctgtgtacaagcaaagactcttataagcatcagggaact
aatactgggtgcaaaaatgagatctctgctgatgcttcatctgcaaggagttgcaaagat
aagcaggagacaagtgtcaacagtatgtttcaatccagactgctccccactaaacaggta
tcaaaagaaacaccaccagattgctccagctcctctaaaaatgaccctagtgtgcaggag
aaagaagatgacagtattttgcttttaggaattaatgacacctcagtgaaaaaagtatca
acagaagaaaaatcaatttcattgttgaggtctaaggaagacactgacatgcaaacttca
gaccaggaacagtctcatttaaatgacttggttcaatttgatagtaaacatcaaatttca
aaggccttttgtatggataaaacttcaccaaatggttgctttccatccagctctgaaaac
aagagggatacatccaaccctgctgctcaggtcaggccactgtcagtgaaatgtgaatcc
agtgataaattgtttaaattttcagaatatttcaagagggaaaagacttcaggggcgaaa
aaagaggagagttttgtgaagatggtgtctgaagatactactctatctgactctcaggtt
gacagagatctcagtaaattatctttagctgcttatgctaaaagtgtcaatttttccttt
gagtcaagccaagaaagttcagtacaatataatgtgtgtaatattagaaggaaagtgaaa
ggtgctgtaagatcttccaatgaagaccaaagagccaagtctccctgtaacgcagattgc
cataaaaatcaagtcattgtagttttagactcttctgatgaagaaaaacgtttgtctgat
gaggaggaaacaaaactgaagggtgaaaatgtgtgtcctgcagagcagccttcaacctcc
agcagcattttggatcgtgatgtcaaaacagactccaagtctccaagcactcccttgtca
ctggatgagtgtgagtctcagtactttgaatttgaaacagaagctgaggtcttctctgct
tggcaagatactcaggcatatgctctggaagcaactcaagagtataagcaaaatgatgtt
acgacagcaactgacagtagcaattcaggtgaatccctgcatgatagcactaatgaatgg
ggttatgaggtggattacatagattatgataccatggaagaaggagaagcaagctcaata
gaaaacagttctcagcagaaggaaactgatggtacgaaagaagtgaccaattcaacgtcg
caagaatctgctagtaaggaaaatgcaaaaggtcaactggagaattttgctgacaaaggt
actgctgctaaagtcttcaccccggactcaaaactacctgaacccagagcatctacatcc
acagtctccttagctgcaaagttggccctgaagaaaaacagcacaagcccacagaagatg
gtagcaaaatctaaactagcaatagccattcagagaagtcctaaaaaacctcctgttatt
aaaccagcccaggataaaaaactgcttccaagaataccagaacattctcaacctggtagg
tcattgcctgctgtggttcctccaaagaaggttcggcagtgtcctgcaccagcatcaact
gtggaaaggcttgggctgaagaaggctccgcgcaaagccttcgacctgtcccagcgctcc
ctggagagtgtagctctgctgcgcaaccacggcaaagctgcagggagggttggagctgca
cagggacagagggctaaactcatcgatgctcagaatttgtctgtgaaatacaacaagaaa
ttgctagcctgccaagaccgccagtttttaaggcagacgaggcccaaaaaaagtgtcagg
gtgaaaaatcctgcaggaagtgctgagggtaggaacaaaaaggttagtaaaggatgtgca
aaatctatgaaacagggttttgagctgacgtctgttgaaggatctgttagagagaaaaaa
agagaggagactacttattcttttgccagtgagagaagatttgaaagctgctctggggag
gagacctctacctctaaaatgcctggttcttcaggctggaacaggaagttggaggatagc
agtgttcctgctgtccctatggattcaagcacctcttccactgcacttggagatggtaaa
gctcaatcttcaggaagaggttccactgtcctgcctgagtgtgagacaaaaacttcaaaa
gcagatgggtgtaaaccagatgaaagtggtgaagatgatgataatctgtttttaactcag
ttagatcctgtggatatggaattatgttctcaggatgaaaattatcaagatactgccata
gctagtgaaaacccagaggaaacaaatgttgctaaaaaccttcagcagaatgaatcctca
gctgttgtgaaatgcagtgacaaagactgtacagaaaaagtgggcaaagctggagagtcc
tgcagcaagcatacagccacagatcatgtgtttgccaagccttcccttctgccacccaaa
atcagaaagccttccactaccaagattttcagctcagcaagctcttcccggaatgcagcc
ttcagcaaggacctagagaatgccacgttacctccaccttccaaaagcaaagtgaatgca
gtgagaccagtagtggtctggccaccactcccacgggctgtaccagcagggaatcaagtg
tgcaagactccaagattgagtaacacacctcaaccctatgtctctaataatattctgcag
tcccaaaccagacagtatgataatgcttccaatatctccagagggtctggccgaggagtt
tgttctccctttcttggtggtcagcagagagatcacagtatttttgttaatcaagtccta
aagtggacttatgatatgtttgcaaacttcagccactttggaactccaagtgttcttctg
cagtctgtggtagcttctgttcctgtccaatttcagggctacaatgattattttgatacc
tttttccccttgatgatgctaaatgcctttgaaacactggcacaagagtggatagaaaac
cagggagggagagagaagagttactgcttctacttacagaccttctctgctgacatgaat
acagcacattttacagctccatttcgagaagctgatttggcaaggcagctgcatccaaag
gaggatgacttaatccttttgctttttnntttagacacctttggggaagaaagtggggtg
gagaaccacatagtgaatcacgttggtcttgtgacacgattttctcgtgcgtctgggtat
gcagctagacaaaaggagcagcttactgtctgtcatctttctgtgcaaacccgaggcaac
ttgtcattcttcatccaaaagcaagtgaagtgtgtggtggttggttccctggtgaccaca
caccgaatgttcaaaggtctgctgctgctgagcaggagtcccctggctaaacccatctta
aatccatgctacaatgacttctgtcccagagacctgaccatagcctcaggaagtgctgct
ttgaacatgaatgagtacaatgaagaccaaaagagagccattgagacagcttatgccatg
gtaaaacaacatccagggcttcccaagatctgcctcatccatggaccacctgggacaggg
aaatcaaaaactatcgttggacttctgtctcgtgttttgagagaaaacactaggaatgag
aagacagctcggagaaagaattccaagatcaaaccaaaccgtttcctggtctgtgcacct
tccaatgctgctgttgatgagctcatgaaaaagatcattgttgcgttcaaggaaaaatgc
caaaacaaacaggaacctttgggaaactgtggtgatatcaaactagtgcgacttggtgct
gagaaagcaatcaacactgaagtcagaggattcagcctggataagcaagttgaacacaga
atgaaacgaaaaccaggggactctgactgggatatccagaagaaggaggaagctctggac
cagaagctggacatgctgtctcgggaacgtgccatgcacagatgtgagaagagagagagc
caaaagttagatgatgaaattgccagactttcaaaggagagacaacaacttgcttctcag
ctaaaggaggttcgggggtactctcagaaggtacaggcagatatcatcctggaatctgac
attatctgctgcaccctgagcaccagtggagggagcctgctggaatcagccttttcacgg
caaggcctcgatcccttcagctgtgtcatcgtggatgaggcagggcagtcctgtgaggtc
gaaacactgatcccactgatccatcgctgtactaaacttgtccttgttggagatcccaaa
cagctccctcctactgtaaaatcagtaaaagctcaggaatatggctatgaccagtccctg
atggctcggctgcagaggcacctggaggagcaagtgcaaaggaaggtgctgcggagtctc
cctgtcgtgcagctgactgtgcagtacaggatgcaccctgacatctgcctcttcccatcc
aactatgtgtatggcagaactctgaagactgccagagcaatagaagagaacagatgttcc
tcagagtggccattccagccctaccttatctttgacgtagcagacggtcgtgaggagcga
gacaacgactctttcagtaatcctcatgaagtgaagctggtgatggaattaatcaaaaca
attaaagaaaagaggaaggatctgggtctgcgtcgcattggaataattaccccttacagt
gcacagaagaagaaaattcaggaacaactggacagtgtttttaggaacaacagcccagga
gaagtggacacagtggatgcattccagggaagagagaaagattgcatcatagtgacatgt
gtccgggcaaacagtaccaagggatccattgggtttctggccagccttcagcgcctgaat
gtcaccattacccgagccaagttcagcctcttcatcctgggcaggctgcagacactcatg
gataataaagactggaacaaattgattcaggatgctcagaaaagaggtgccattattagg
acagcagaaaaaaattacaagaaagatgctctgaagattttgaagttcaagccagcacca
ccaagcacagcagggacaaggacacctcctgtggtgcagactggttctgccagcagcaag
aggagtgagctcacaaatcctgggagcagcccacaggaaggtgctgctagccctggccat
gcaatgccccagggaagcagaggacccccccagcctccaggggctccagctgcagactcc
aggagaaactccaggagaagcagtgcccctgcacccacgggggctgcagcagttcctgcc
aatccagagaaaccacgggaccccaggctggccagtagaactgaaggaaaagggaaggaa
caggttgtgaaagacaacaactgcccagtccagagccatccaggatccacaacacagcaa
ggcctggctgtgtcctcagctgccagggatcaggtttccagaataggtgccagggatcag
atttccagaacagaaaacgttaagaagccccaggaaacaataggacaatgcaatgtgctt
cccacgtcttcttacagcgctcggcacgagggtgaccagagaggagctgtgtccaaaagc
agttcaggagcccccagtgagagaggtcagaagaacagcagtgagtggagcagagactgt
cgtggtttaacagggagaccaccagaggaatcaccagagaacacagacccaagctctgcc
aagcgaaggaagatctttcactga
DBGET
integrated database retrieval system
