Acanthisitta chloris (rifleman): 103807144
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Entry
103807144 CDS
T08456
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
achl
Acanthisitta chloris (rifleman)
Pathway
achl03013
Nucleocytoplasmic transport
achl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
achl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103807144 (UPF1)
03015 mRNA surveillance pathway
103807144 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
achl03019
]
103807144 (UPF1)
Enzymes [BR:
achl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103807144 (UPF1)
5.6.2.5 RNA 5'-3' helicase
103807144 (UPF1)
Messenger RNA biogenesis [BR:
achl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103807144 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
103807144 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
103807144
NCBI-ProteinID:
XP_009078116
LinkDB
All DBs
Position
Unknown
AA seq
1052 aa
AA seq
DB search
MVVSLFAAIVNGPDGILQNGAVDENVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCG
IHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCG
CRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPS
EQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFG
PLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRY
KGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSA
LKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRP
LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCA
KSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAEREL
LMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQL
GPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVT
AADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAK
PDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANE
HQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNL
RESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQI
GMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFG
IPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDE
FKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtgtcgctgttcgccgcgatagtgaatggacctgatggcatcctgcagaatgga
gctgtggatgagaacgtggccaagaccagccagctcctggcagagctcaactttgaggag
gatgaggaagatacctattacaccaaggaccttcctgtgcatgcctgcagttactgtggg
atccatgaccctgcctgtgtggtctactgcaacaccagcaagaaatggttctgtaatggt
cgtggaaacacctcaggcagccacattgtgaatcatctggtgagagccaagtgcaaagag
gtgactctccataaggatggacctctaggagagactgtcttggagtgttacaactgtgga
tgtcgtaatgtgttcctgcttggcttcatcccagccaaggctgactcggtggttgttctg
ctgtgcaggcagccatgtgccagccagagcagcttaaaggatatcaactgggacagctcc
cagtggcagcctctcatccaggaccggtgcttcctctcctggctggtcaagattccatct
gagcaggaacagctgagggcaaggcagatcacagctcagcagatcaacaagctggaggag
ctctggaaggagaatccatctgcaacccttgaggacttggaaaaacctggtgtggatgaa
gagccacagcatgtcctgcttagatatgaagatgcttatcagtaccaaaatatctttggt
cctctagtcaagcttgaggcagactatgacaagaaactcaaggagtctcagacccaagat
aacatcacagtcagatgggacctgggcttgaacaagaagagaattgcttatttcactctg
ccaaagactgattcaggggacatgcgtctgatgcaaggagatgagatctgcctgaggtac
aaaggagacctggccccgctgtggaaaggaattgggcatgtcatcaaagtccctgataat
tatggtgatgagattgccatcgagctgaggagcagtgttggagcccctgtggaagtgact
cacaacttccaagtggattttgtgtggaagtcaacttccttcgacagaatgcagagtgct
ctgaagacatttgctgtggacgagacctctgtgtctgggtacatctatcacaagctgttg
gggcatgaagtggaggatgtcatcattaaatgccagttgccaaagcgcttcacagcacaa
ggacttcctgatctcaaccattctcaggtttatgctgtgaaaactgtcctgcagcgtcct
ctgagccttatccagggtccccctgggactggaaaaacagtgacatcagccactattgtc
tatcatctggccagacagggcaatgggcctgtgctggtgtgtgctcccagtaacatcgct
gtggaccagctgaccgagaagatccaccagactggactcaaagtggttcgtctgtgtgcc
aagagtcgggaggccatcgactcccccgtgtccttcttggcactgcacaaccagatcaga
aacatggacagcatgccagagcttcagaagctgcagcagctcaaggatgagactggagaa
ctctcatcagccgatgagaagcgttaccgagcactgaaacgaactgcagagcgtgaactg
ctcatgaatgcagatgtgatctgctgcacctgtgtgggagcaggggacccaaggcttgcc
aagatgcagttccgctccatcctgatcgatgagagcacccaggccaccgagccagagtgc
atggtgcccgtggtcctgggagcaaagcagcttattctggtgggtgaccactgccagctg
gggcctgttgtgatgtgtaagaaagctgccaaggctggtctgtcccagtccctgtttgag
aggctggtggtgctgggcatccgccccatccgcctgcaggtgcagtatcgcatgcaccct
gcgctcagcgccttcccctccaacatcttctacgagggctcgctccagaatggtgtcact
gcagctgatcgtgtgaagaaagggtttgatttccagtggccacagcctgataagccaatg
ttcttctatgtgacacaagggcaggaggaaattgccagctcaggcacctcttacttaaac
aggacggaagctgccaatgtggagaagataaccacgaagctcctgaaggctggagccaaa
ccagaccagattggcatcatcaccccttatgaaggtcaacgatcctacctggtgcagtac
atgcagttcagtggctccttgcacacaaagctctaccaggaagtggaaattgcaagtgtg
gatgccttccagggccgggagaaggactttattatcctctcatgtgtgagggccaacgaa
caccagggaattggcttcctgaatgaccccaggaggcttaatgtggctcttaccagagca
aggtatggagtaattattgttgggaaccccaaagccctgtctaagcagccactctggaac
cacctcctgaattactacaaggagcagaaggtgctggtggagggaccactgaacaacctc
cgggagagcctcatgcagttcagcaagcccaggaaacttgtcaacaccatcaacccaggt
gctcgtttcatgaccactgccatgtatgatgcacgggaggcaataattccaggatctgtc
tacgacaggagcagccaagggcgcccatccaacatgtacttccaaacccacgaccagatt
gggatgatcagtgctggccccagccacgtcactgccatgaacattcccatccccttcaac
ctggtgatgcctccaatgcccccaccaggatactttggccaggccaacggacccgctgca
ggccgaggggctccgaagggaaagactggtcgtggtgggcgccagaaaaaccgatttggg
atccctggaactagtcagtcaaaccttccaaatagtcaagcgagccaagatgtggtgtcc
cagcctttctcccagggtccactgactcagggctatatctccatgagtcaaccatcacag
atgagtcagcctgggctctcccagccagaattatcacaggacagttaccttggtgatgag
tttaaatcccagattgacgtggcactgtcccaggactcaacttaccagggtgaacgtgca
tatcaacacggtggagtgacgggactgtcacagtattag
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