Acanthisitta chloris (rifleman): 103809333
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Entry
103809333 CDS
T08456
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
achl
Acanthisitta chloris (rifleman)
Pathway
achl03015
mRNA surveillance pathway
achl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
achl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103809333 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
103809333 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
achl03019
]
103809333 (PABPC1)
03041 Spliceosome [BR:
achl03041
]
103809333 (PABPC1)
Messenger RNA biogenesis [BR:
achl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103809333 (PABPC1)
mRNA cycle factors
Stress granule specific factors
103809333 (PABPC1)
Spliceosome [BR:
achl03041
]
Complex C
Other components
Complex C specific factors
103809333 (PABPC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_MUD2_C
RRM_ACIN1
RBD_DEAH11
RRM_5
RRM_10
RRM_occluded
RRM_7
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
103809333
NCBI-ProteinID:
XP_009080414
LinkDB
All DBs
Position
Unknown
AA seq
566 aa
AA seq
DB search
MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV
CDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT
NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM
NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR
KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK
EERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTNQLAQL
ARPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTM
GPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTASML
ASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEA
VAVLQAHQAKEAAQKAVNNPTGVPSV
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgatgtcattaaaggcaaaccagtgcgtatcatgtggtctcagcgcgatcca
tctctacgcaaaagcggtgtgggaaacatcttcatcaaaaacttggacaaatcaattgat
aacaaggctttgtatgacacattttctgcttttgggaacatcctgtcttgtaaggtggta
tgtgacgaaaatggatccaagggttatggatttgtacattttgagacacaggaagctgca
gaaagagctattgagaaaatgaatggaatgctgcttaatgaccgcaaagtattcgttgga
aggtttaaatcccgcaaggaacgtgaggcagagcttggagccagagcaaaggaattcacc
aatgtttacatcaaaaattttggagaagacatggatgatgagagacttaaggaactcttt
ggcaagtttggtcctgccctaagcgtgaaagttatgactgatgagagtggaaaatccaaa
ggctttggcttcgttagttttgaaagacatgaagatgcccagaaagctgtggatgagatg
aatgggaaagagctcaatgggaaacaaatctatgttggccgggctcagaaaaaggtggaa
agacagacggagctgaagcgcaagttcgaacaaatgaagcaggacaggatcaccagatac
cagggtgtaaacctttatgtgaaaaatcttgatgatggaattgatgatgagcgtctccga
aaagagttctccccatttggtacaatcactagtgcaaaggtcatgatggaaggtggccgc
agcaagggatttggctttgtatgcttttcgtcaccagaagaagccaccaaagcagtcaca
gaaatgaatggtagaattgtggctactaaaccattatatgtagctctagcccagcgcaaa
gaggagcgccaagctcacctcaccaaccagtacatgcagagaatggcaagtgtaagagca
gtacccaatcctgtaatcaacccttaccagccagcacctccttcaggttacttcatggca
gctatcccacagactcagaaccgtgctgcgtactaccctactaaccagctcgctcaactt
gctaggccaagtcctcgctggactgctcagggtgccagacctcatccattccaaaacatg
cctggtgctatccgcccagcagcacccagaccacccttcagtaccatgagaccagcctct
tcacaagttccacgagtcatgtccacacagcgtgttgctaatacatcaacacaaaccatg
ggtccacgtcctgcagcagcagctactgcagctactcctgctgtacgcacagttccacag
tacaaatatgctgcaggtgttcgcaatcctcagcagcatcttaacacacagccacaggtt
gctatgcagcagcctgctgtccatgtgcaaggtcaggaacccttgactgcttccatgttg
gcttctgcccctccacaagaacaaaagcagatgttaggtgaacgtctctttcccctcatt
caaagcatgcaccctactctggcgggtaagatcactggtatgttgttggagattgacaac
tctgaactcctccacatgctcgagtctcctgagtctcttcgttcgaaggttgatgaagct
gtagccgtactacaagcccaccaagctaaagaggctgctcaaaaggcagttaataaccct
actggggttccaagtgtttaa
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