Acanthisitta chloris (rifleman): 103810114
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Entry
103810114 CDS
T08456
Symbol
TNR
Name
(RefSeq) LOW QUALITY PROTEIN: tenascin-R
KO
K06252
tenascin
Organism
achl
Acanthisitta chloris (rifleman)
Pathway
achl04510
Focal adhesion
achl04512
ECM-receptor interaction
achl04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
achl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103810114 (TNR)
04518 Integrin signaling
103810114 (TNR)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103810114 (TNR)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
achl00536
]
103810114 (TNR)
Glycosaminoglycan binding proteins [BR:
achl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103810114 (TNR)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
FN3_DSCAM-DSCAML_C
EGF_Teneurin
EGF_TEN
Pur_ac_phosph_N
Fn3_Dep-1_3rd
Fn3_Dep-1_2nd
Fn3_VIN3
EGF_Tenascin
FN3_Tor_3rd
EGF_2
Fn3_R-PTP-O
Lzipper-MIP1
TSC22
Motif
Other DBs
NCBI-GeneID:
103810114
NCBI-ProteinID:
XP_009081249
LinkDB
All DBs
Position
Unknown
AA seq
1320 aa
AA seq
DB search
MGTDSENPVLRNVLISFNLLLLGTVLKPFECRLEVTTEPAERTAVDEVGGLANCSPPIKE
QPMVFHHIYNINIPMDSCCSSMFKSSAEEVSSEDERLAEYTEQTSDSESQVTFTHRINMP
KQACKCSTSLPSLQELLSRIEMLEREVSILRDQCTSNCCQENAATGQLDYIPQCSGHGNF
SLESCSCVCMEGWGGEDCWVLRCPAGCGSRGLCVDGECVCEEGFTGEDCSQLRCPRDCSG
KGYCANGTCVCQEGFAGEDCTWLHCPNACSGRGLCQQGLCVCEEGYEGQDCSAVAPPANL
RVTGMSETSIELMWDSPGAATEYVVSYQPAVPGGTQLQQRVPGDWSSITITDLEPGVAYN
VSIYSVISDVLSNPVTTRVMTNLATPQGLKFKTITETTVEVQWEPFSFPFDGWEISFIPK
NNEGGVIAQLPSTVTTFNQTGLKPGEEYTVTVVALKEQARSPPTSDSVSTLIDGPTQILV
RDVSDTVAFVEWXXXXXXXXYGREEGEGGRTTFRLQPPLSQYSLQALRPGARYRLAVSAL
RGANESRPALAQFTTEIDAPKNLRVGSRTHASLELAWDNSEAEAHSYRVVYSTLAGEHYH
EVLVPRDTGPTTRATLADLVPGTEYGIGISAVMDSQQSVPATMNARTELDSPRDLVVTAS
TETSISLAWTKATGPIDHYRVTFTPASGMASEVTVSRDEAQLTLSELEPGTEYTISIIAE
RGRQQSLEATVDAFTGVRPITQLHFSQLTSSSVNVTWSDPSPPADHLILTYSPRDDEEAA
QEVTLDGTRRHASLTGLQPSTEYLVSLVAVHGSISSEPVVGSITTGIDAPKDLRVGNITQ
ESMMIYWSPPIAAFDHYRISYRAAEGRTDSIAIANDATEYTLHHLQPATKYEIGVKSVRG
REESELASIITYTAMDAPLGVTATNITPTEALLQWNPPLSEVESYVLILTRRAVAGETIL
VDGDNQEYQLTNLLPTTTYTVSMYATNGPLTSQTISTNFTTLLDPPRNLTASEVTRRSAL
LSWVPPLGDIENYVMTYRSTDGSRKELIVDAEDTWIRLEGLSETTEYTVRLQAAQNAMRS
GFISTTFTTGGRVFANPQDCAQHLMNGDTLSGVYTISINGDLSQRLPVYCDMTTDGGGWI
VFQRRQNGLTDFFRKWADYRVGFGNLEDEFWLGLDNIHKITSQGRYELRIDMRDGQESAY
AYYDKFSIGDSRSLYKLRIGEYNGTSGDSLTYHQGRPFSTKDRDNDVAVTNCAMSYKGAW
WYKNCHRTNLNGKYGESRHSQGINWYHWKGHEFSIPFVEMKMRPYNHRNISGRKRRSLQL
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atggggactgacagtgaaaacccagtcctgaggaatgtgctcatcagcttcaacttgctt
ctgctgggcactgtcctcaagccttttgagtgccgcctggaggtgaccacagagccagct
gagaggacagcggtggatgaggtgggtggccttgccaactgcagcccacccatcaaagag
cagcccatggtcttccaccacatctacaacatcaacatcccaatggacagctgctgctca
tccatgttcaagtcttcagctgaggaggtgagttcagaagacgagcggctggcagagtac
acggagcagacctccgacagcgagagccaggtcaccttcacccacaggataaacatgccc
aagcaggcctgcaagtgctccacctccctcccgtccctgcaggagctgctgagcaggatt
gagatgctggagagggaggtctccatcctccgggaccaatgcacctccaattgctgccaa
gaaaatgcagccacagggcagctggattacatccctcagtgcagcggccacgggaacttc
agcctggaatcgtgcagctgtgtgtgcatggagggctgggggggcgaggactgctgggtg
ctgcgctgccccgcgggctgcggctctcgcgggctctgcgtggacggcgagtgtgtctgc
gaggaaggtttcaccggggaggattgctcccagctgcgctgcccccgggactgctcgggg
aagggctactgcgccaacggcacgtgtgtctgccaggagggcttcgccggcgaggactgc
acgtggctgcactgccccaacgcctgcagcggccgcgggctctgccagcaggggctctgc
gtctgcgaggaaggctacgaagggcaggactgctcagcagtggctcctcctgcaaacctg
cgagtgactgggatgagcgaaacctccatcgagctgatgtgggacagccctggggcagcc
accgagtacgtggtctcgtaccagccggcggtgccagggggcacccagctccagcagcga
gtgcctggggactggagcagcatcaccatcacagatctggagccaggtgttgcctacaat
gtcagcatctattcagtcatcagcgacgtcctgagcaaccctgttaccaccagggtgatg
accaacctcgccacgccacaggggctgaagttcaagaccatcacagagacgaccgtggag
gtgcagtgggagcccttctccttccccttcgatggctgggagatcagcttcattcccaag
aataacgagggtggtgtgattgctcagctccccagcaccgtcaccaccttcaaccagact
gggctgaagccaggggaagagtacaccgtcactgtggtggccctgaaggaacaagccagg
agccctcccacctccgacagcgtctcaaccctcatcgacggcccgacgcagatcctggtg
cgggacgtctcggacacggtggccttcgtggagtggnacgnnnnnnnnnnnnnnnnnnag
tacgggcgggaggagggggagggcgggaggaccaccttccgcctgcagccccccctcagc
cagtactccctgcaggccctgcgccccggcgcccgctaccgcctcgccgtcagcgccctg
cggggtgccaacgagagccggccagccctcgcccagttcaccacagagattgatgccccc
aagaacctgcgggtgggctcgcggacacacgccagcctcgagctcgcctgggacaacagc
gaggccgaggcacacagctacagggtggtctacagcaccctggctggggagcactaccac
gaagtcctggtgccacgtgacactggtcccaccacccgggccaccctggcagatctggtg
ccggggacagagtacggcatcgggatttcagccgtgatggacagccagcagagcgtgcca
gcgaccatgaatgccaggaccgagctggacagcccccgggaccttgtggtgacagcctcc
acggagacatccatctcactggcctggaccaaagccacgggtcccatcgaccactaccgt
gtcaccttcacccctgcctcagggatggcctctgaagtgacagtgtcccgggacgaggca
cagctcaccctctcagagctggagcctgggacagagtacaccatctccatcatcgccgag
aggggacgacagcagagcctggaggccaccgtggatgccttcacaggtgtccggcccatc
acacagctccacttctcacagctgacatcctccagtgtgaatgtcacgtggagtgatcca
tccccaccagcagaccacctcatcctcacctacagcccccgggacgacgaggaggcggca
caggaggtcacactcgacggcacccgccggcacgccagtctgacaggcctgcagccatcc
actgagtacctggtgtcactggtggctgtgcatggttccatcagctccgagcccgtggtg
ggctccatcaccacagggattgatgctccaaaggacctcagggtgggcaacatcacccag
gagtccatgatgatctactggagccctcccatcgctgccttcgaccactatagaatatcc
taccgtgctgccgaagggaggacagacagcattgccattgccaatgatgccactgagtac
accctccaccacctgcagcctgctaccaagtacgagatcggggtgaagagcgtgcggggc
cgggaggagagtgagctggcctccatcattacctacacagccatggatgcccccttgggg
gtcacagccaccaacatcacccccaccgaggcgctgctgcagtggaacccgccgctgtcg
gaggtggagagctatgtcctcatcctcacccgccgtgcagttgcaggagaaacaattctt
gtggatggagacaaccaggagtaccaactgaccaacctgctgcccactaccacctacaca
gtctctatgtatgccaccaatgggcctctcaccagccagaccatcagcaccaacttcaca
actcttttggatcctccaagaaatctgactgccagtgaagtcacccgacggagcgccctg
ctctcctgggttcctcccctgggagacatcgagaactacgtcatgacctacagatccact
gatggcagccggaaggagctgattgtggatgctgaggacacgtggatccgcctggagggg
ctgtctgagaccacggagtacaccgtgcgcctgcaagctgcccaaaacgccatgcgcagc
ggcttcatctccaccaccttcaccacaggaggacgtgtctttgctaaccctcaggactgt
gcccagcacctgatgaatggagacacactaagtggtgtctacaccatctccatcaatgga
gacctcagccagcggctgccggtgtactgcgacatgaccaccgacggaggtggatggatt
gtcttccagcggcggcagaacgggctgactgatttcttccggaaatgggcagattaccgc
gttggctttggaaacttggaggacgagttttggctgggcttggacaacatccacaagatc
acgtcccaggggcgctatgagctgcgaatagacatgagggatgggcaggaatcagcttat
gcttactacgacaagttctccatcggtgactcccggagcctgtacaagctgcgaattggg
gagtacaatggcacttcaggggactccctcacctaccaccagggccgccccttctccacc
aaggacagggacaatgatgtggctgtgaccaactgtgccatgtcctacaaaggggcctgg
tggtataagaactgccaccgcaccaatctcaacggcaagtacggagagtcccggcacagt
caggggattaactggtaccattggaaaggccacgagttctccatcccctttgtggaaatg
aagatgcgaccttacaaccaccgtaacatctctgggaggaagcgacggtcgctacagctc
tga
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