KEGG   Acanthisitta chloris (rifleman): 103811040
Entry
103811040         CDS       T08456                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
achl  Acanthisitta chloris (rifleman)
Pathway
achl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:achl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103811040 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:achl03041]
    103811040 (SNRNP40)
Spliceosome [BR:achl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    103811040 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    103811040 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd EIF3I Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Cytochrom_D1 WDR54 WD40_like WD_LRWD1 Beta-prop_Nup120_160 PROPPIN
Other DBs
NCBI-GeneID: 103811040
NCBI-ProteinID: XP_009082233
LinkDB
Position
Unknown
AA seq 338 aa
MPQACPLSPSPLSPVLSLVPSPCVLCPQGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGN
TLASAGFDRLILLWNVYGDCDNFATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSE
TGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAV
TFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTV
RIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAGGSADRFVYVWDTTSRRI
LYKLPGHAGSVNELAFHPEEPIILSASSDKRLYMGEIQ
NT seq 1017 nt   +upstreamnt  +downstreamnt
atgcctcaggcatgtcccttgtccccctcacctttgtcccctgtgctgtctcttgtcccc
tcaccgtgtgtcctctgcccccagggccccccacgctgctcctctctgcaggctcccatc
atgctgctctcagggcacgagggagaggtttactgctgcaagttccaccccaatggcaac
accttggcctctgctggcttcgacaggctcatcttgctgtggaatgtctatggggactgt
gacaactttgccaccctgaagggacacagtggggcagtcatggagctgcactacaacaca
gatggcagcatgctcttctcagcatccacagacaaaacagtggctgtgtgggacagtgag
actggcgagagggtgaagaggctgaagggccacacgtccttcgtgaactcgtgctatcct
gcacgcagaggtcctcaactcgtctgcaccggcagcgacgacggcaccgtcaagctgtgg
gatatcaggaaaaaagctgctgtccagacattccagaacacttaccaggtcctggctgtg
actttcaatgacaccagtgaccagatcatatctggaggcatcgacaacgacattaaggtg
tgggacctgcgccagaacaagctcacttacaccatgagaggccatgcagactcagtcaca
ggcctcagcctcagctctgaaggctcctacctcctctccaatgccatggacaacacagtt
cggatctgggatgttcggccctttgcccccaaagagaggtgtgtgaagattttccagggg
aatgtacataactttgagaagaaccttctgaggtgctcttggtccccagatgggagtaaa
attgcaggaggctcagctgacaggtttgtctacgtgtgggacaccacatccaggaggatt
ctgtacaagctgccaggccatgctggatcagtgaatgaactggctttccatccagaggag
cctatcattctctctgcatccagtgacaaaaggctctatatgggggagatccagtga

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