Acanthisitta chloris (rifleman): 103811117
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Entry
103811117 CDS
T08456
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
achl
Acanthisitta chloris (rifleman)
Pathway
achl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
achl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103811117 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
achl03019
]
103811117 (PATL1)
Messenger RNA biogenesis [BR:
achl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103811117 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
103811117 (PATL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
103811117
NCBI-ProteinID:
XP_009082315
LinkDB
All DBs
Position
Unknown
AA seq
765 aa
AA seq
DB search
QKGSLYRYKRLEDCPLDEDEDAFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAEL
EDKGVTSQEQDGPVGDEGDVLGEPEDTLAERLTRLVIDSELEDPAIMQAVHTRGPTQQAG
GLNSSIWDSSAMLRRIRGPLLAQEMPSVSVLDYALPQRPPQPREEERDPSERALPRRSSS
PVIGSPPVRAVPIGTPPKQAAIPNFNQQILCPKPVHIRAPMQQRYPAPYGDRMSPNQLCN
VPNSSLLGHPFPHSVSPVLTHLQRAQLLGGAQVQPGRMSPSQFARVSSLVGSPIPSMNPK
LLQGRVGQMMPPAGGFRAFFGAPPPSQLQHPPGPGSHLPNLRPQLFRADTTHLHPQHRRL
LHQRQQQSRNQHRSLNGSGGDRGGHRSSHQEQIRKDPYANLMLQREKDWVSKIQMMQLQS
TDPYLDDYYYQNYFQKLEKLAAAEEVHGDGPKKERTKLITPQVAKLEHTYKPVQFEGSLG
KLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRY
LLSLEGERPALMGERKQKICDMYDNLRGKAPGQDRPSDDHFMQIMCIRKGKRLVARILPF
LSPEQAADVLMATARNLPFLIKKDAQDEVLSCLLRPFSHVLYHLPLGTVTSLVQQLTNLP
QSAAAPTNLHLTAVLQNKFGLSLLYLVLSRGEELQSSDTNTELMQDNQWTELMLMATREL
LRIPQGALAKPVSIPSNLVSLFSRYVDQQKLNLLETKLHLVHGIR
NT seq
2300 nt
NT seq
+upstream
nt +downstream
nt
gccagaaggggtcattgtataggtataagaggctggaggactgcccactggacgaagatg
aagatgccttccaggccctgggggaggaagatgaagacattgaccagttcaatgacgaca
ccttcggcgctggagctgtcgatgacgactggcaggaggcccacgagcgtctggcagagc
tggaggacaagggggtgacaagccaggagcaggatggccccgttggggatgagggggatg
tgctgggtgagcccgaggacacgctggccgagcggctgacacggctggtcatcgacagcg
agctggaggaccctgccatcatgcaggccgtgcacaccaggggtcccacacagcaggctg
gagggctgaattccagcatctgggacagctcggctatgctgcggcgcatccgggggccac
tgcttgctcaggagatgccatcagtgtccgtgctggattatgccctgccccagagaccgc
cacagccccgggaggaggagcgggacccctcggagcgggcgctgccgcggcgctcatcgt
cccctgtcatcggcagccccccggtccgggctgttcccattggaacccctcccaagcagg
ctgccatcccaaacttcaaccagcagatcctgtgtcccaagcctgtgcacatccgagctc
ccatgcagcagcgttatcccgctccctatggagacaggatgtctcccaaccagctctgca
atgtaccgaattcttctctcctgggccacccgttcccccacagcgtctctcccgttctca
cccacctgcagagagctcagctactcggaggagcccaggtacagcccggccgaatgtccc
ccagccagtttgctagggtatccagcctggttggaagccccattccctccatgaatccca
agctgctccaaggcagagtggggcagatgatgcctccagccggtgggtttcgtgccttct
tcggggctccccccccttcccagctgcagcacccacccggccctggatcccacctgccca
acctgaggccgcagttattccgagcagacacgacccacctgcacccccagcaccgtcggc
tcctgcaccagcggcagcagcagagtcggaaccagcaccggagcctcaacggctccgggg
gggaccgagggggtcaccggagcagccatcaggagcagatccggaaagatccctatgcca
acctcatgctgcagagggaaaaggattgggtgtccaagatccagatgatgcagctgcaga
gcactgatccatacctggatgattattactaccagaattacttccagaagctggagaagt
tggcagcagctgaggaagtgcatggcgatggtcccaagaaggaacgcactaaactcatca
cacctcaggtggctaagctggagcatacctacaagccagtgcagtttgagggctcattgg
gaaaactcactgtctccagcgtcaacaacccgcggaagatgatcgatgcggtggtgacgt
cccgcagtgaggatgatgagacaaaagagaagcaggttcgggataagagacgacagaccc
ttgtcacaatcgagaagacatacagcctcctcctggatgtggaggactatgagcgccgct
acctcctgagcttggaaggcgaacgaccagccctgatgggagagaggaagcagaagatct
gtgacatgtatgacaatctgagggggaaagcacctgggcaggacaggccgagtgatgacc
acttcatgcagatcatgtgcattcggaaaggaaagcgcctggtggccaggatcctcccgt
tcctgtccccagagcaagcggccgacgtgctcatggccacagccaggaacctgcccttcc
tcatcaagaaggatgctcaggatgaggtgctgtcctgcctgttgaggcccttctcccacg
tcctctaccacctgcccttggggacagtcaccagccttgtgcagcagctcacgaacctac
ctcagagcgccgccgcgcccaccaacctgcacctcactgctgtgctccaaaacaagtttg
gtctgtccctgctgtacctggtcctgagccgtggggaggaactgcagagctcggacacaa
acacagagctgatgcaggacaaccagtggacggagctcatgctcatggcgacccgggagc
tcctgcggatccctcagggagccttagcaaagcctgtgtccatcccctccaacctggtct
ccctcttctcacgctacgtcgaccagcagaagctgaacctgctggagacgaaattgcact
tagtgcacgggatccggtag
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