Acanthisitta chloris (rifleman): 103811837
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Entry
103811837 CDS
T08456
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
achl
Acanthisitta chloris (rifleman)
Pathway
achl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
achl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103811837 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
achl03019
]
103811837 (PARN)
Enzymes [BR:
achl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
103811837 (PARN)
Messenger RNA biogenesis [BR:
achl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103811837 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
HRM
Motif
Other DBs
NCBI-GeneID:
103811837
NCBI-ProteinID:
XP_009083081
LinkDB
All DBs
Position
Unknown
AA seq
577 aa
AA seq
DB search
MDFLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQGF
DFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSFMSPNSTKCPVTIPEDQKKFI
EKVVEQIEDLLKNEESESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIVV
SKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQFY
CPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEVPFSPPKVE
SAEGFPSYDTAAEQLHEAGYDAYITGLCFISMANFLGSFLSPPRNHVSARSELIEPFFNK
LFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQPEQVQIAVNTSKYAESYKIQTYAEYVEKKHEDKQAKRKCTEDSWKEMERKRLKT
QCTSYVSQSRYYCVNSFTGTSTVGKRSMSPIEEETGSDDMEEGEGQDPEYDQTDSCAESL
PDRKKRAKKLKKMKTEEVPAGSLTTSSSGIFEVPETW
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggactttttgctttttcagtttggcctttgcacttttaaatacgatcacacagaagaa
aagtatataatgaagtcattcaatttctatatttttccaaaaccctttaacagaagttca
cctgatgtcaagtttgtctgtcagagttcaagcatagattttttagcaaaccaaggattt
gattttaataaggtttttcgcaacggaattccatatttaaaccaggaagaagaaaggcag
ctgagggaacagtacgatgagaaacgttctcaagccaatggtgcaggatctctgtcattc
atgtctcccaattccaccaagtgtcctgtaacaattcctgaagatcagaaaaaatttatt
gagaaagtagtggaacagatagaagacttactaaagaatgaagaaagtgaaagtttggaa
ctggagccttgtacaggatttcaaaggaaattaatttatcagaccttgagctggaagtat
cccaaagggatccatgttgaaaccctggagtcagataagaaagagagatatattgttgtt
agtaaggtagacgaggaggagcggaagagaagagagcagcagaaacaagcaaaggaacag
gaggaattgaatgatgcagtaggattttccagagttgttcatgccattgctaattctggc
aaacttgttattgggcacaatatgctgctggatgttatgcataccatacaccagttctac
tgtcctctgcctgatgacctgagtgagttcaaggaagtgacatcctgtgtctttccccgg
ttattggataccaaactgatggcaagtacacagccttttaaggagatcattaataataca
tcactagcagaactggaaaagcgtttgaaagaggttccattcagccctcctaaagttgaa
agtgctgaagggtttccaagttatgacacagctgcagaacagctccacgaagcaggatat
gatgcttacatcactggactctgcttcatctccatggctaatttcctaggttcattcctc
agccccccgagaaaccatgtgtcagctagatcagaactcatcgaacccttttttaacaag
ctgtttctgatgagagtgatggacattccctatctcaatttggaaggaccagacttgcag
ccaaaacgagaccatgttcttcatgttacttttcccaaagagtggaagactagtgacctt
taccagcttttcagtgcctttggtaacattcaggtttcgtggattgatgatacatcagca
tttgtatccctgagccagccagagcaagtgcagatagctgtaaacaccagcaagtatgct
gaaagttataagatccagacatatgcagaatatgttgagaaaaaacatgaagacaaacag
gcaaagagaaaatgtacagaagatagttggaaggagatggagagaaagaggttaaaaact
cagtgcacatcttatgtttcccagagtcgatactactgtgttaacagttttacaggtacc
agcacagtgggaaagagaagcatgagtcccattgaggaagaaactggttctgatgacatg
gaggaaggagaaggccaagatccagaatatgatcagacagactcctgtgcagagtctctt
ccagatcgtaagaagagagccaaaaagttgaaaaagatgaagacagaagaagttccagca
ggaagcctcacaactagctcctctggaatttttgaagtccctgaaacatggtag
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