Acanthisitta chloris (rifleman): 103811909
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Entry
103811909 CDS
T08456
Symbol
PDCD11
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
achl
Acanthisitta chloris (rifleman)
Brite
KEGG Orthology (KO) [BR:
achl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
achl03009
]
103811909 (PDCD11)
Ribosome biogenesis [BR:
achl03009
]
Eukaryotic type
90S particles
Other 90S particles
103811909 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
Spt6_S1
OB_RRP5
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
Suf
TPR_14
HAT_PRP39_C
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
103811909
NCBI-ProteinID:
XP_009083159
LinkDB
All DBs
Position
Unknown
AA seq
1829 aa
AA seq
DB search
MASMEESFPRGGTQKKPAEGKTPNPKLERDNLFEVHHEEKSQKRKRSQRDEGKQKKFKAD
KTATAKDNVVNIGPLTIEALREGMLLLGCIKEASDYELVISLPSGLSGFVPITQISDAYS
KLLSKQVAQGELLEDLNSLPDLYPPGTLVRCIVTSVEKSDDGRRSVKLSIDPKKVNKGLN
ASALATGMVLSGSVSSLEDHGYLIDIGVIGAHAFLPHQKAKNCIKAGKRGPDLKIGQNLN
CLIVEVKNEGRVVRLSIDRSEVAASLATERQNWSLSNLLPGLVVKAQIQKVVPLGMKLTF
LTCFTGVVDFMHMDPEKAANYSPDQVVKACILSVHPSSKVVRLTLRQPFLRPGGCPNQLS
RDRMGAVVEQSAVKAFYKQFGAIFELDDGALAFARLKHLSKNRKSFKPGAFKEGCKHKCR
IIDYSLMDEMCVVSLKYHIIEAQFLQYQDIHTGDVVQGKVLSLKPIGMHVKVADGIKGLV
PSLHLADVILKQPEKKYNIGDEVRCRVLECNPAEKKLILTLKKSLVQSKLPVLSNYEDAK
PGLIIHGFVVCARDFGCIVKFYNDVKGLVPKHELSSEPISCPDKVFREGQVVKVMVLKCE
SQQERLLLSFRLSSKSGPEDKSERTPKKKHEMKYQIGETVDVKVLKKKDNGLEVSILEDE
GNGVAWIPTLHLSDFVSTSKLLWHCLQEGDVLPRVMCLSDRGEHIILSRKSAVISAVQEE
QVVRNFSEIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQ
TVIAKVMSIDEEKQRVLLSLKVSECSSGDSAAESFALLNQYFKELKEIRNLLRRREKPST
AQGLCELVPGKELQLVVQDVREDDGSALFSGXAVAATRYHLGGEDLVPGEKMKGLVLHAD
ALTSQVYVSLREELLKRRPKQRLTENSQHCAIVQHIEEQFAIVSLETGQLAAVPIASHFN
DTFRFDSEKLKVGQRISATLKAVKENDCGVLLAVQGPAKKNVFVRVRNESESVLEEMLPA
VKHSLSLGDIVTGTVKSVKPTHVTVAIDDKLTGSIHASRILDEVPIGSFPTFTLKAGQKV
TARVIGGRDVNTHRYLPITHPQFTQSIPELSIRPNEKKGKFTAMLSLKEDSALKKLGLYS
VGQTVTCFVRKYNILKNWLEVEVAPDVRGRVPHLLLSLNIKVLKHPEKNFKNGQAISATV
TGTDVTETNLCLSLTGIPSLEQGTITVGTITKVTPHVGLTLALPGGKTGKISIFHLNDTY
TENPLSSFKVGKIVRCYILSNKNDKIQLSLRQSRLNPKMNSKVEDVEITCTKDVKEGQLV
RGYVKSITSSGVFFGLSTSLLGRILFQNVSPYFVQDHSLYEKYLPEGKLLTAKVLGVSGK
EKHIELSLLPEDTGMPSILPESLDLPQYGAEEEEREANDEEKREELKLKTKRRRGNSESG
QEAKTKKRKVCPADENDSGIEVYYREEDEDDQEKEAAKKKSEIRKRGEAPRLQVSMGFIW
DEDMNAMDIPVLNQKEESSESEEEEDPQSKLKKQTKKEKELEKQRKEKELCKVEAALMDP
SRQPQSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTICFREEQEKL
NVWVALLNLENMYGTEETLMKVFERAVQYNEPLKVFQHLCDIYADSEKYKQAEELYHTML
KRFRQEKSVWLKYASXXXXXXTHRLLDRALKALPTKEHVDVISRFAQLEFRFEDTEHAKA
LFESTLSSYPKRTDIWSIYMDIMIKHGSQKEVRDIFERVIHLSLAPKKMKFFFKRYLDYE
KKFGTTESVLAVKRAAVEYVETKSSLADT
NT seq
5490 nt
NT seq
+upstream
nt +downstream
nt
atggcatccatggaagaaagctttcctcgagggggcacccagaaaaagcctgcagaggga
aaaacacccaacccaaagttagagcgggacaatttgtttgaggttcaccatgaagaaaaa
tcccagaaaagaaaaaggagccaaagagatgaaggaaagcagaaaaagttcaaggcagac
aaaacagccactgctaaagacaatgttgtgaatattggaccgctcacaattgaggccctc
cgtgagggaatgctgcttcttggttgtataaaagaggccagtgactacgagttagtcatc
agcttgcccagtggtctttctggatttgtgccgatcactcagatcagcgatgcctacagc
aaattgctgagcaagcaagtggcccaaggagaactcctagaggacttgaattcgcttcca
gacttgtatcctccaggaacactggtcaggtgcatcgtgaccagcgttgagaaaagtgat
gatggacgtcgcagtgtcaaattatcgattgaccccaagaaggtcaataagggtctgaat
gcttcagcactagcaacaggcatggtgctctcaggctctgtgtctagtttggaagaccat
ggctacctcatagacattggagtcattggggctcatgctttcctgcctcatcagaaagcc
aaaaactgcatcaaagcaggcaagagagggcctgacttgaaaatagggcagaacctgaac
tgcctcattgtggaggtgaagaacgagggcagagtggtccgtttgtccattgaccgatcc
gaggttgctgcatcccttgccacagagcgacagaactggtcactctctaatttattgcca
ggactggtggtgaaagctcaaatacagaaggtggtcccacttggaatgaaactgaccttt
ctgacttgctttactggcgttgtggatttcatgcacatggacccagagaaagcagcaaac
tattctccagatcaagtggtgaaagcttgcatcctgtctgtacaccccagctccaaggtg
gtgcgactcactctgcgccagcccttcctccgccctgggggatgcccaaaccagctctcc
agggatcgcatgggggcagtagtggagcagtcggcagtgaaagctttctacaagcagttt
ggtgccatcttcgagcttgatgatggtgctcttgcatttgcacggttgaaacatctttca
aaaaacagaaaatcctttaaacctggggcatttaaggaaggctgtaaacataaatgtcga
atcattgactacagcctgatggatgagatgtgtgttgtatctctgaaatatcatattatt
gaagcacagtttctgcagtaccaagatatccacacaggtgatgtggtgcagggcaaagtg
ctttctctgaaacccattgggatgcatgtgaaagtggctgatgggattaaaggacttgtg
ccatccctccatcttgctgatgtgatcctgaagcagcctgagaagaagtacaacattgga
gatgaagtcaggtgtcgggtactagagtgcaatcctgcagaaaagaagctcatccttact
ctaaagaaaagtcttgtccaatcaaagcttccagtcctctcaaattatgaagatgcaaag
ccaggactgatcatacatgggtttgtggtgtgtgcaagggattttggctgcattgtgaag
ttctacaatgatgtcaaaggtctggtacccaagcatgagctgagctcagaacccatatct
tgtccagataaagtcttccgtgaaggccaggttgttaaagtaatggtcttaaaatgtgag
tcccagcaggaaagactcttgttgtccttcaggttatcaagcaagtctggccctgaggac
aaaagcgaacgtactccaaagaagaaacatgaaatgaagtatcaaataggagagacagtt
gatgtgaaagtcttgaagaagaaagataatggattagaagtttctatcttagaagatgaa
ggcaatggggtagcctggattcccacactgcatctctctgactttgtttctacctccaag
ctcttgtggcattgtcttcaagagggagatgtcctgcccagagttatgtgcctaagtgac
aggggagaacacattattttgagcagaaagtctgcagtgatttctgcagtacaggaggag
caagttgtgagaaacttctctgaaatccagcctggcatgctcttgactggttatgtgagg
aatgtgatgccctttggagtatttgtggagttcccttttggtgtgacaggactggcaccc
aaagtgagcatgagtgacaagtttgtgacggacaccaaggaccactttgtggtgggacag
actgtgattgcaaaggtgatgagcattgatgaggagaagcagcgtgtgctcctcagtctg
aaggtgtcagagtgcagctcaggcgattctgctgcagagagctttgccctcctgaatcaa
tatttcaaggagctgaaggaaatcaggaacttgttgagaagaagagagaagcccagcaca
gcccaaggcctttgtgagttagtgcctgggaaggagctgcagctggttgtgcaggatgtg
agggaggatgatggctcagcactgttcagtggcnaggcggtagctgccactcgctaccat
ctgggaggtgaggatcttgtccctggtgagaaaatgaagggattggttcttcatgcagat
gccctcacatcccaggtgtatgtttctcttcgggaagaactgttaaaacgaagacccaag
caacggctgacagagaactcccagcactgtgccattgtgcagcacattgaagagcagttt
gccatcgtgtctttggaaacaggccaactggcagctgtccccatagcctctcacttcaat
gacaccttccgctttgactcagaaaaactgaaggtgggacaaagaatctctgcaacctta
aaagcagtgaaggagaatgactgtggagtcttgttagcagtgcaaggcccagcaaagaag
aatgttttcgtaagggtccggaacgaatccgagtcagtgttagaagaaatgcttcctgct
gtgaaacactcgctgtccctgggggatattgttactggtactgttaaatctgtcaaacca
actcacgtcactgttgctattgatgacaagctgacaggttcaatccatgcgtcccggatt
ctggatgaagtgcccataggctcttttccaacatttactctgaaagctggacagaaggtg
actgctcgagtcattggaggcagagatgtgaatactcacaggtacctgcccatcacccat
ccacaattcacacaatccattccagagctcagcattcgaccaaatgaaaaaaaagggaaa
ttcacagcaatgctgagccttaaagaagacagcgccctcaagaaacttggactctacagt
gttggacagacagtcacctgttttgtaagaaagtataacattctcaaaaattggctggag
gtggaagttgcccctgacgttcgaggaagagttcctcatctgctgctgtctctgaacatc
aaggtcttaaaacacccggaaaagaactttaaaaatggccaggcaatatcagctacagtg
actggaacagatgtcaccgaaacaaacctctgcttgtcactcacaggaattccgtcactg
gagcagggcaccatcactgtaggcacaataacaaaggtgactccacacgttggtttgacc
cttgcactgccaggtgggaagactggcaaaatcagcatctttcacctgaatgatacttac
acagagaatcctctgagtagcttcaaagttggcaagattgtcaggtgttacatcctctcc
aacaagaatgacaaaatccagttatctctccggcaatcccggctaaatccaaagatgaac
agcaaagtggaggatgttgaaataacatgtactaaggatgttaaagaaggccagctagtg
agaggctacgtcaaatcgatcacttcatcgggggtattcttcggcttgtccacttctctt
ctgggccgaatcctgttccagaatgtttccccatactttgtacaggaccattccttatat
gaaaagtacctgcctgaaggaaagctgctcactgccaaggtgcttggtgtaagtggaaaa
gaaaaacatattgagctctctctcctgcctgaggacactgggatgccaagcatcttgcct
gaatccctagacctaccacaatatggtgcagaggaagaggaaagagaggcaaatgatgag
gaaaaaagagaagagcttaagctgaagacaaaaaggagaagaggaaactctgaaagtggg
caggaggcaaagacaaaaaaaaggaaggtctgcccagcagatgaaaatgacagtggaatt
gaggtatattaccgtgaggaggatgaggatgaccaggagaaggaggcagctaaaaagaaa
tctgagataaggaaacgtggtgaagctcccaggctgcaggtttccatgggcttcatctgg
gatgaggacatgaatgcaatggatatacctgtgctgaatcagaaggaagagagctcagag
agtgaggaggaggaggatccacagtccaagttaaagaaacaaacaaaaaaggagaaggag
ctggagaagcagaggaaggagaaggagctttgcaaagtagaggcagctctgatggacccc
agtcgacagcctcagtcagcagatgactttgaccgcttggtgctgagcagtcccaacagt
tccatcctctggctgcagtacatggctttccacctccaggctacagagattgagaaagcc
agagctgtggcagagagagcgcttaaaacaatctgtttcagggaagaacaggagaagctg
aatgtctgggtagctctgctgaacttagagaacatgtatggtaccgaggagacactgatg
aaggtttttgagagagctgttcaatacaatgaacctctgaaagtcttccagcatctgtgt
gacatctatgctgattctgagaagtacaagcaagcagaagaattgtaccacacaatgctg
aagcgttttcgtcaggagaaatctgtgtggctgaaatacgcctcnnnnnnnnnnnnnnnn
nnnacacacagacttttggatcgggctctcaaggctttgcccactaaagaacatgtggat
gtcatttcaaggtttgcccagctggagttccgttttgaggacacagaacatgccaaggcc
ctctttgagagcaccctcagcagctatcccaagaggacagacatttggtccatctacatg
gatatcatgatcaaacatggcagccagaaggaagttcgggacatctttgagagggtcata
cacctgagcttggcaccaaagaagatgaaattctttttcaaacgctacctggattatgag
aagaaatttggtacaacagaaagtgtcctggctgttaaaagagcagcagttgagtatgtg
gagaccaagagttcccttgctgacacctaa
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