Acanthisitta chloris (rifleman): 103812070
Help
Entry
103812070 CDS
T08456
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188 homolog
KO
K14311
nuclear pore complex protein Nup188
Organism
achl
Acanthisitta chloris (rifleman)
Pathway
achl03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
achl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103812070 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
achl03019
]
103812070 (NUP188)
Messenger RNA biogenesis [BR:
achl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
103812070 (NUP188)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
103812070
NCBI-ProteinID:
XP_009083325
LinkDB
All DBs
Position
Unknown
AA seq
1731 aa
AA seq
DB search
VCRSSRELWTILLGRSALREPAQIAVELNKHWQRLLEGLSYYKPPSTTSAEKIKADKDVA
APLKELGLRVSKFLGLDEEQSVQLLQSYLQEDYRGTRDSLKTVLQDERQSQALMLKLADY
YYEERICILRCVLHVLTYFQDERHPYTAQYLQCIEKLDKELVPNYRKQFEALYKAEAPTW
ETHGNLMTERQVSRWFVQCLREQSMLLEVIFLYYAYFEMAPDELLAFAKMFREQGFGTRQ
TNRHLVDESMDHWVDRIGYFSALILVEGMEIDSLHVRALEDRIEKHKLANSEHIYQEMDN
QLLQFGDVSHHAPVLLAWALLRHTINPEEATNVIRRMGSTAIQLNVFQYLTKLLRSLSSG
GKNCTASTACMCIYGLLSFILTSLELHTLGNQQDIIDAACEVLAASSIPQLFWKTKPTAG
LGIILDSVCGMFPHLLTPLLQLLQALVSDKSTAKKVYSFLDKMSFYIELYKHKPPDVISH
EDGTLWRRQAPKLLYPLGLGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWTLFTCEIE
MLLHVVSTADVIQHCQRVKPIIDLVHKVISTDVSIADCLLPITSRIYMLLQRLTTVISPP
VDVIASCVNCLTVLAARMPAKVWTDLHHTGFLPFVANPLSSMNHMISAERMNAGGYGNLL
MSIEQPQGEYSVTISFLNLVTTLVRGQLGSTQSQGLVPCIVFVLKEMLPNYHKWRYNSHG
VREKIGCLILQLIHAILNLCPEMDPHSSHAPSLQSLCIFSLANTEAGQAVINIMGIGVDT
IDMVMASQSSSDESQGQGQLLIQTVKLAFSVTNNVIRLKPPSSVVSPLEQALTQHGAHGN
NLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRDAFLTHLQSKI
EDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSDGSKEFSLGEWSCLQVVLELIDSK
QQERYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTNPLFGTLPPPSESSE
LSVLDTCALIMKIICLEIYYVVKGSLDQSLIDTLKNFSTKKRFAYWSEYVKLLAQHVAET
EGTTCASGTEYQMLISAWRMLLIISTSYADIMHLTDSAVHQQLFLDVLSGTKALLQVPTS
VSCLQLGSMLCTLLLILLKQWKSELGSVDKIINSLTQILEGVLQADQQMMEKTKAKVFSA
LITVLQMKEMKVNDIPQYSQLVLSVCETLQDEVIALFDQTRHSLTLGEAADDKDSMETDD
ASRAKHKDQRDGVCVLGLHLAKELCEVDEDGDYWLQITRKVPVLPTIFAALEISLRVKQN
LHFTEASLHLLLTLARTQQGAAAMAGAGVTQSVCLPLLSVYQLSTNGAIQTSASSRKSLD
APSWPGVYRLSMSLMERLLKTLRYNFLTEALDFVGVHQERILQCLNAVRTVQSLACLEEA
DHTVGFILQLSNFTKEWNFHLPQLMRDMQVNLCYLCQACTSLLHSRKMLQHYLQTKNGDS
LPSSVTPRVQRNPQASSKHPSPESEAAEQKALLTVQYSLLKILSKSLAALRHFTPDVCQI
LLDQSLDLAEYNVLFVLSFTTPAFDSDVAPSFGTLLATVNVALNMLGELDKKKEPFPQAA
GLNMQEGTKTLKSLLMFTMENCFYLLISQAVRYLRDPSVHPRDKQRMKQELSSELSTLLS
SLSRYFRRGGPSSPASGVLPSPQGKSASKLGPEGQEPLFQLVQAFVRHVQR
NT seq
5196 nt
NT seq
+upstream
nt +downstream
nt
gtttgcaggagcagcagggaattatggacaattcttctgggcagatcagctttaagagaa
cctgcacagattgctgtagagctgaacaagcactggcagaggttgttggagggattgtca
tactacaaaccaccaagtacaacttcagcagaaaaaattaaagctgataaagatgtagct
gctccactaaaagagttgggcctgagggtcagcaagtttttgggtctggatgaagagcag
agtgtgcagttgttacagtcatatcttcaagaagattacagaggaacaagggactccctg
aagacagttcttcaggatgaaaggcagagtcaggctctgatgctgaagcttgctgactac
tactatgaggagaggatctgcatcctgcgctgtgtcctgcacgtgctcacttacttccag
gatgagagacacccttacacagctcagtacttgcagtgtattgaaaagttggacaaggaa
ctagttccgaattacaggaaacagtttgaagcactgtacaaagcagaagctcctacatgg
gaaacacatggaaatcttatgacagaacgtcaggtctcccgttggtttgtgcaatgcctc
cgtgaacagtccatgctcctggaagtcatcttcctctactatgcatactttgagatggca
cctgatgagcttctggcctttgcaaagatgttcagagagcaggggtttggcacgaggcaa
accaacaggcacttggtagatgagagcatggatcactgggtggatcgtatcggctacttc
agtgctctgattctggtggaagggatggaaattgactccctccatgtgcgtgctctggaa
gatcggatagagaagcacaagttagccaacagtgagcacatctaccaggagatggacaat
cagctgctgcagtttggggatgtctcacatcatgctccagtgcttttggcctgggctctg
ctccgtcacaccataaacccagaggaagccacaaatgtcatcaggaggatgggcagcact
gctatccagctcaatgtgttccagtatctcaccaagctgctgcgatccctcagcagtggg
ggcaagaattgtactgccagcacagcttgtatgtgtatttatggacttctctccttcatc
ctgacatcactggagttacataccttgggcaatcagcaggatataattgatgctgcatgt
gaagttctggcagcttccagcattcctcagctcttctggaagacaaaaccaactgcaggt
ctgggtattatcctggacagtgtatgtgggatgttcccccatcttctcactcctctcctt
cagctgctccaagctcttgtctctgataaatctactgctaaaaaggtgtacagtttcctg
gataaaatgtccttctacattgagctgtacaagcacaaacctccagatgtgatctcccat
gaagatggcacactgtggcgaagacaggctccaaagctcctctatccccttggactaggt
caaacaaatctacggatacctcaggggacagtgggccaggtgatgttggatgatagagct
tatttggtacgctgggaatattcctacagcagctggacactgttcacctgtgagattgag
atgctgctccatgttgtgtcaacagcagatgtgattcagcactgccagagggtcaagccc
ataattgatctggttcataaagtgatcagcactgatgtgtcgatagcagattgtcttctg
ccaatcacatcacgaatttacatgctcctgcagaggctaacaactgtaatctctccccct
gtggatgttattgcttcctgtgtcaattgtttgacagtcctggctgctcggatgccagcc
aaggtttggactgaccttcaccacacagggttcttaccatttgttgccaatccactgtcc
agtatgaatcacatgattagtgcagagagaatgaatgctgggggctatggaaacctattg
atgagcatagaacagccccaaggcgagtacagtgttaccatctccttcctgaacctggtg
acaactcttgtccggggacaacttggtagcacccagagccaaggccttgtgccctgcatt
gtgtttgtcctgaaggagatgttaccaaattaccacaaatggagatacaactctcatgga
gtgagagagaaaattggatgcctgattctgcagctgatccatgctatactgaatttgtgc
cctgagatggatcctcacagcagccatgcccccagcctgcagtccttgtgcatcttcagc
ctggccaacacagaggcaggacaggctgtcattaacatcatgggcattggtgtggacacc
attgacatggtcatggcctcccagtccagcagtgatgagtcccagggccaaggtcagctg
ctgatccagacagttaagctggcattctccgtcaccaacaacgtcatccgactgaaaccc
ccgtccagtgtggtgtctcccttggagcaggcactcactcagcatggtgctcatggaaac
aatcttattgctgtcttggccaaatacatctaccacaagcatgaccctgcccttccacgc
ttggccatccagctgctcaaacgactggctacggtggctcccatgtctgtgtatgcctgc
ctgggcagcgacgccgctgcgatccgcgacgccttcctcacccacctgcagagcaagatc
gaggacatgcgcatcaaggtcatgatcctggagttcctcacagttgcagtggagacacag
cctgggctcatcgagctcttcctgaacctggaagtgaaggatggcagtgatggatcaaag
gaattcagcttaggggagtggagctgcctccaagtagtcttagagctgattgactccaag
cagcaggagaggtactggtgccctcccctcctgcaccgagctgccatcgccttcctgcac
gcgctgtggcaggaccggcgcgacagtgccatgctcgtgctgaggaccaagccaaagttt
tgggaaaacttaactaatcccctctttgggactcttcctccaccctcagaatcatcagag
ctcagtgtcttggatacctgtgccttaatcatgaaaatcatctgtttggagatctactac
gttgtcaagggctccctggatcagtccctgatagacaccctgaagaatttctccaccaaa
aaacgctttgcctactggtcagagtacgtgaagttactggcacagcacgtggcagagact
gagggcaccacctgtgcctctggcaccgagtaccaaatgctcatctcagcctggaggatg
ctgctcatcatctccactagctatgcagatatcatgcatctgactgattcagcagttcat
cagcagttgtttctggatgtgctgagtggcaccaaggctttgctccaagttcccacgtca
gtgtcctgcctgcagctggggtctatgctgtgtacccttcttctgatcctgctcaaacag
tggaagagcgagttgggttctgtggataaaatcataaactccttgacgcagattctggag
ggagtactacaggcagatcagcagatgatggagaaaaccaaagccaaagtgttctcagct
cttatcactgttctgcagatgaaggagatgaaagtgaatgacatcccccagtactcccag
ctggtgctgagtgtgtgtgagacactccaggacgaggtgattgcgcttttcgatcagact
cggcacagcctgaccctgggagaggctgcagatgacaaggacagtatggagacagatgat
gcttccagagcaaagcacaaggaccagcgagatggggtgtgtgttctgggtctgcatctg
gctaaggagctttgtgaagtggatgaagatggagactactggctgcagattactaggaaa
gtgcctgtgcttcctactatctttgctgcattggagatcagcctgagagttaaacaaaac
cttcacttcacagaggcctcgttacatttgctgctgaccttagcaaggactcaacaggga
gcagcagcaatggctggagctggtgtcacccagagtgtctgcctgcccctcctgagtgtg
taccagctcagcacaaatggagccattcagacatctgcttcatcccgaaaatctctggat
gctccttcgtggcctggggtgtatcgcctctccatgtccctcatggaacgtcttctcaag
accctgaggtacaacttcctcacggaagcgctggacttcgtcggtgtccaccaagagagg
atccttcagtgcctgaatgcagtacggactgtgcagagcttggcctgtttggaagaggct
gatcacactgttggcttcattcttcagctctcaaatttcacaaaggagtggaatttccac
ctgccacagcttatgagggacatgcaggtgaatctgtgttacctgtgccaggcctgcacc
tccctcctgcacagccgcaaaatgctccagcactacctgcagacaaagaatggtgattcc
ctcccatccagcgtgactccccgggtgcagcgtaatccccaagcctcctccaaacatccc
agccctgagtcagaggcagcagagcagaaagctctgctcacagtgcagtacagtctcctg
aaaatcctcagcaagtctctcgctgccctgcgccatttcacccctgatgtctgccagatc
ctcctcgaccagtctctggaccttgctgagtacaatgtgctctttgtgttgagtttcacc
acaccagcctttgactcagatgtggcaccttcctttgggacactccttgccacggtcaac
gtggccctgaacatgctgggagagctggataagaagaaggaacctttccctcaggctgca
gggctgaatatgcaagagggaaccaaaaccctcaagtctctgctcatgtttacaatggaa
aactgtttctacctgctcatctcccaagccgttcggtacctgagggacccctcggtgcac
ccccgggacaagcagcggatgaagcaggagctcagctcagagctgagtactctgctctcc
agcctgtctcgctacttccgccggggtggtccctcttcacctgccagtggggtccttccc
tctcctcaaggaaaatctgcctccaagctgggccctgaggggcaggagcccttgttccag
ctcgtgcaggcctttgtgcggcacgtgcagagatag
DBGET
integrated database retrieval system
