Achromobacter sp. E1: V6V88_08380
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Entry
V6V88_08380 CDS
T10430
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
achm Achromobacter sp. E1
Pathway
achm03030
DNA replication
achm03430
Mismatch repair
achm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
achm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V6V88_08380 (dnaE)
03430 Mismatch repair
V6V88_08380 (dnaE)
03440 Homologous recombination
V6V88_08380 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
achm03032
]
V6V88_08380 (dnaE)
03400 DNA repair and recombination proteins [BR:
achm03400
]
V6V88_08380 (dnaE)
Enzymes [BR:
achm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
V6V88_08380 (dnaE)
DNA replication proteins [BR:
achm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
V6V88_08380 (dnaE)
DNA repair and recombination proteins [BR:
achm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
V6V88_08380 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
XAZ80534
LinkDB
All DBs
Position
1827158..1830649
Genome browser
AA seq
1163 aa
AA seq
DB search
MSEAVTTPTPFVHLRVHSEFSVVDGTVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYK
GARGAGVKPIAGCDVWISNDEDPAKPFRLLLLVRNHQGYLNLCELLSKAFLTNQGKGRAE
IRREWLQGQAGLIALSGGRAGDVGQALEAGNAVSALALARQWALMFPGSYYIELQRAGMD
GDEGYCQAAMRLAAEAGLPVVATHPVQFLDEFEFQAHEARVCIAEGEILANPRRVRRFSK
EQYLLSSEEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTPDGVTLDDYLVQL
SEQGLEKRMEFLFPDPAERESKREQYYERLRWECKTIIQMGFPGYFLIVQDFINWGKNNG
VPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVI
DYVKEKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGLSKLIPFNPMDPWTLER
TLKDEPAFKDRYEQEEEVRSLVDLAKPLEGLTRNIGMHAGGVLIAPGKLTDFCPLYCQPG
QENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNAEKRDFDVMALALDDP
AAYKILCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALYRPGPLESGMVDDFVNR
KHGRAAVDYFHPDLEATLKSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEE
MAKHRELFEQGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYALISYQTAWLKAYHP
TEFLAATMSSDMDDTDKVQIFCRDAQDNGVEVLPPDVNHSGYRFEPVADKHTEKGKPPRT
MRYGLGAVKGTGQGAVEDILRARKEGGPFLNLFDFCRRVSKQAVNRRTIEALIKAGAFDT
IEPNRAAMLASVPTAMEAAEQAARSANQASLFGDDSGDVVAGELAKVAPWDLHKKLTEEK
SALGYYYSGHLFDAWRDEVRRIVPMQLARVEPQRDLQWMCGVLASVRVMMTRRGKMVFAV
LDDGTAQVEISVFNELYEKHRNRLREDQLVIVQGKVSNDDYSGGMRIVAEQLYDLQLARE
ARAKSLRVKLNGTADAARLRQMLNPFRAEPENGIPGVPVDIVYTKNNFLCTVRLGEEWRV
RMADTLLANLNDWTKPDGVEVTY
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaagccgtaacgaccccgaccccatttgttcacctgcgcgttcactccgagttt
tcggtcgtggacggcacggtgcgtattcccgacctcatcaagcgtgtggccaagctgggc
cagcccgccgtcgccctgaccgatctgtcgaacctgttcggactgatcaagttctacaag
ggcgcgcgcggcgcgggggtcaagcccattgccggctgcgatgtctggatctccaacgac
gaagaccccgccaagccatttcgcctgctgttgctggtacgcaaccaccagggctacctg
aatctctgcgaactgctgtccaaggccttcctgacgaaccagggcaagggccgcgcggaa
atccgccgcgaatggctgcaagggcaggccggtctcatcgccttgtccggcggacgggcc
ggcgacgtcgggcaggcgctggaggccggcaatgccgtctcggcgctggccttggcccgc
cagtgggcgctgatgttccccggcagctactacatcgaattgcagcgcgccggcatggac
ggcgacgaaggctactgccaggccgccatgcggctggccgccgaagccggcctgccggtg
gtcgccacccatcccgtgcagttcctggatgaattcgaattccaggcccatgaggcccgt
gtctgcatcgccgaaggcgagatcctggccaacccgcgccgcgtgcgccggttctccaaa
gagcagtacctgctcagctccgaggaaatggcgcgccggttcgccgacgtgccgtcggcg
ctggccaatacggtcgaaatcgccaagcgctgcaacctgagcctggtgctgggcaagccg
cgcctgcccaatttccccacgccggacggcgtgacgctcgacgattacctggtccagctc
tccgagcagggcctggaaaagcgcatggagttcctgtttccggaccccgccgagcgcgag
tccaagcgcgagcagtattacgagcggctgcgctgggagtgcaagaccatcatccagatg
ggctttcccggctacttcctgatcgtgcaggacttcatcaactggggtaagaacaacggc
gtgccggttggaccgggccggggttccggcgccggttcgctggtcgcctacgcgctgggc
atcaccgacctcgatcccatccgctatgacctgctgttcgagcgcttcctgaatcccgag
cgggtctccatgcccgacttcgatatcgacttctgccaggacaaccgcgaacgggtcatc
gactacgtcaaggaaaaatacggccgggccgccgtcagccagatcgcgaccttcggcacg
ctgggcgccaaggccgtggtgcgcgacgcgggccgcgtgctggacatgccctacatgttc
tgcgatggcctgtccaagctgatcccgttcaacccgatggatccctggacgctggagcgc
acgctcaaggacgagcccgccttcaaggaccgctacgagcaggaagaagaagtccgctcg
ctggtcgacctggccaagccgcttgaaggcctgacccgcaacatcggcatgcacgcgggc
ggggtgctgattgcgcccggcaagctcaccgacttctgcccgctgtactgccagccgggg
caggagaacagcgcggtctcgcagttcgacaaggacgacgtggaggccgccggcctggtg
aagttcgacttcctggggctgcgcaacctgacgattctggactgggccgtgcgctacgtg
cgccagttcaacgccgaaaagcgcgacttcgacgtcatggcgttggccctggacgatccg
gcggcctacaagatcctgtgcgatgccaacaccaccgcggtgttccagcttgaatcgcgc
ggcatgaaagagctgctcaagaagctgcggcccaacacgttcgaagacatcatcgccatg
ctggctctgtatcgtccggggccgctggaatcgggcatggtggacgacttcgtgaaccgc
aagcacgggcgcgcggccgtcgattatttccacccggacctggaagccaccctgaagagc
acctacggggtcatcgtctaccaggaacaggtgatgctgatctcgcagatcatcgggggc
tactcgctgggcggcgccgacctgctgcgccgggccatgggcaagaaaaagcccgaggaa
atggccaagcaccgcgagctcttcgaacagggcgccaaggaaaagggccacgatcccgac
ctggcggtcaagcttttcgacctgatggagaagttcgccggctacggcttcaacaagtcg
cactcggccgcgtacgcgctgatctcctaccagaccgcctggctgaaggcctaccacccg
accgagttcctggccgccaccatgtcctccgacatggacgacaccgacaaggtccagatc
ttctgccgcgacgcccaggacaacggcgtcgaggtgctgccgcccgacgtcaaccactcg
ggctaccggttcgagcccgtcgccgacaagcacaccgaaaaaggcaagccgccgcgcacg
atgcgttacggcctgggcgccgtcaagggcacggggcagggcgcggtcgaagacatcctg
cgcgcgcgcaaggaaggcggcccgttcctgaacctgttcgacttctgccgccgcgtcagc
aagcaggccgtcaaccgccgcaccatcgaagcgctgatcaaggctggcgcgttcgacacc
atcgagcccaaccgcgccgccatgctggcctcggtccccaccgccatggaagcggccgag
caggccgcgcgcagcgccaaccaggcttcgctctttggcgacgacagcggcgacgtggtc
gccggcgaactggccaaggtcgcgccctgggacctgcacaagaagctgaccgaagaaaaa
tccgcgctgggctattactacagcggccacctgttcgatgcgtggcgcgacgaagtgcgc
cgcatcgtgccgatgcagcttgcgcgggtggagcctcagcgcgacctgcaatggatgtgc
ggcgtgctggccagcgtgcgcgtcatgatgacccgccgcggcaagatggtctttgccgtg
ctggacgacggcacggcgcaggtcgagatctcggtcttcaacgaactttacgagaagcat
cgcaaccggctgcgcgaagaccagctcgtcatcgtgcagggcaaggtcagcaacgacgac
tattccggcggcatgcgcatcgtcgccgagcagctctacgacctgcaactggcgcgcgag
gcgcgcgccaagtccctgcgcgtcaagctcaacggcactgccgacgcggcccgcctgcgt
cagatgctcaatcccttccgcgccgaacccgagaatggcattccgggggtgccggtcgat
atcgtctacacgaagaacaatttcctgtgcacggtccggcttggggaggaatggcgcgtg
cgcatggccgacacgctgctggccaacctgaacgactggaccaagcctgatggcgtggag
gtcacctactaa
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