Achromobacter sp. E1: V6V88_08600
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Entry
V6V88_08600 CDS
T10430
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
achm Achromobacter sp. E1
Pathway
achm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
achm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6V88_08600 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
achm03021
]
V6V88_08600 (rho)
03019 Messenger RNA biogenesis [BR:
achm03019
]
V6V88_08600 (rho)
Transcription machinery [BR:
achm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
V6V88_08600 (rho)
Messenger RNA biogenesis [BR:
achm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
V6V88_08600 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
NACHT
S1CSD-TOTE-2
Phostensin_N
Motif
Other DBs
NCBI-ProteinID:
XAZ80569
LinkDB
All DBs
Position
complement(1883107..1884366)
Genome browser
AA seq
419 aa
AA seq
DB search
MHLNELKALHVSQLLEMAAGLEIENANRLRKQELMFAIMKRRAKQGEQIFGDGVLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GVAPEAIKHRIMFENLTPLHPNRVIRLERDIKSEENLTGRILDVFAPIGMGQRGLIVASP
KSGKTVMMQHIAHAITTNYPDAVMIVLLVDERPEEVTEMQRTVRGEVVASTFDEPATRHV
QVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNLEEGGSLTILGTALIETGSRMDEVIYEEFKGTGNSEVHLERRLAEKRVYPSINL
NKSGTRREELLIAPDLLQKVWVLRKFIHDMDEVQSMEFILDKMRATKTNAEFFDMMKKK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcacctcaacgaactgaaggcgctgcacgtctcgcagctgctcgaaatggccgctggc
ctggaaatcgaaaacgccaaccgcctgcgcaagcaggaactgatgttcgccatcatgaag
cggcgcgccaagcaaggcgagcagatcttcggcgacggcgttcttgaagtcctgcccgac
ggcttcggtttcctgcgctcgccggaaacctcgtatctggccagcaccgacgacatctac
atttctccgtcgcagatccgccgcttcaatctgcacaccggcgactccatcgaaggcgaa
gtgcgcacccccaaggatggcgagcgctactttgccctggtgaaggtggacaaggtcaac
ggcgtggcgcccgaggcgatcaagcatcgcatcatgttcgagaacctgacgccgctgcac
ccgaatcgcgtcatccgcctggaacgcgacatcaagagcgaggaaaacctcactggccgg
atcctcgacgtcttcgccccgatcggcatgggccagcgcggcctgatcgtcgccagcccc
aagtccggcaagacggtgatgatgcagcacattgcgcacgccatcaccaccaactacccc
gacgcggtcatgatcgtcctgctggtcgacgaacgcccggaagaagtgaccgaaatgcag
cgcacggtgcgcggtgaagtcgtggcctcgaccttcgacgagcccgccacccgtcacgtg
caagtggccgaaatggtcatcgaaaaggccaagcgcctggtcgaaatgaagaaggacgtc
gtgatcctgctggactcgatcacccgtctggcccgcgcctacaacaccgtcgtgccggcc
tccggcaaggtgctgaccggcggcgtggacgccaacgccctgcagcgccccaagcgcttc
ttcggcgcggcgcgcaacctggaagaaggcggctcgctcaccatcctgggcaccgcgctg
atcgaaaccggcagccgcatggatgaagtcatctatgaagaattcaagggcaccggcaac
tccgaagtccacctcgaacgccgcctggccgaaaagcgcgtctacccgtccatcaacctg
aacaagtcgggcacccgccgcgaagagctgctgatcgcccccgacctgctccagaaggtg
tgggtgctgcgcaagttcattcacgacatggacgaagtccagtccatggaattcatcctg
gacaagatgcgcgccaccaagaccaacgccgaattcttcgacatgatgaagaagaagtaa
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