Achromobacter sp. E1: V6V88_10395
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Entry
V6V88_10395 CDS
T10430
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
achm Achromobacter sp. E1
Pathway
achm02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
achm00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
V6V88_10395 (pdeR)
Enzymes [BR:
achm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
V6V88_10395 (pdeR)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS_4
PAS
CRISPR_Cas2
GGDEF_2
Nre_C
Motif
Other DBs
NCBI-ProteinID:
XAZ80911
LinkDB
All DBs
Position
2263101..2265098
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AA seq
665 aa
AA seq
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MTENQDEKSILHTHFGTQSPYWRLSADSDAIELAAVKGATNIAMALRPDQAEAVRSLTGI
TSSLRIDITLYGDLLHLHLVGRKINANEWAGTASAHTDTESVAKDLVEGLSFAETVVSEA
NSVIAIVDQNGRVQRFNKLCEEYTGKREQDIVGRSVFEMFMTREEAIASRRNIAEFYKRG
QSYEVERTINTVKGPRLFLFRNKFVTSGSGEKRVYLICSGTDITEERQAQERLRVLANTD
MLTNLPNRHAITSRLKAALEAGREGRGGVLFLDLDNFKRINDHYGHGFGDRLLKAVAVAI
SNCLSDGQTLARLGGDEFIVLQEEAQAWQLEATAQRIIDRLREPFRQGLIEVYTSCSIGI
AMYPDHGADLDSVVRSADIAMYVAKEAGRHTYRVFQPDMDRRNADYVWLDTNLRKALAEN
HLMLYYQPKLVGRTGEVDGVEALVRWRSPERGMVGPDTFIPYAEESGLISPLGVWVMREA
ARQAAAWKRDGLNLRIAINMSARQLDDKGVVSEFMRAINDASLNPCLLDIELTESCLIDD
EDAAIELIKQFRQLGARVHLDDFGTGYSSLSQLARIPLDAIKLDASFVRGVNENPVSQAL
ARAIVAVARTLELKVIAEGVETQEETVFLDTLGVDAKQGYLYAKPMPAQELTAWLAQRRR
LHLIA
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaaccaggacgaaaagtcgatcctgcacacgcatttcggtacgcagagccca
tattggcggttatccgccgatagcgatgcgattgaactcgccgcagtcaagggcgcgacc
aatattgccatggccttgcgcccggatcaggccgaggccgtgcgcagcctgaccggcatc
acgtccagcttgcgcatcgacatcacgttgtatggcgatctgctgcacctgcacctggtc
ggccgcaagatcaacgccaacgaatgggccggcaccgcatcggctcacaccgataccgaa
tccgtcgccaaggacctcgtcgaaggcctgtcgttcgccgaaacggtggtgtcggaagcc
aattcggtcatcgccatcgtggaccagaatggccgcgtgcagcgcttcaacaagctgtgc
gaggaatacaccggcaagcgcgaacaggacatcgtgggccgcagcgtcttcgagatgttc
atgacgcgcgaagaagccatcgcctcgcgccgtaatattgccgagttctacaagcgcgga
cagtcgtatgaggtcgagcgcacgatcaacaccgtcaaggggccgcgcctctttctgttc
cgcaacaagttcgtcaccagcggcagcggcgaaaagcgcgtctacctgatctgttcgggc
acggacatcacggaagagcgtcaggcgcaggaacgcctgcgggtgcttgccaacaccgac
atgctgaccaacctgcccaaccggcacgcgatcacgtcgcggttgaaggccgcgctggaa
gccggccgggaagggcggggcggggtgctgttcctggacctggacaacttcaagcgcatc
aacgaccactacggccacggcttcggcgaccggctgttgaaagccgtggccgtcgccatc
tcgaactgcctttccgatggacagacgctggcccgcctgggtggcgacgaattcatcgtg
ctgcaggaagaagcgcaggcctggcagttggaggcgaccgcgcagcgcatcatcgaccgg
ctgcgcgagcccttccgccagggcctcatcgaggtctacaccagttgctccatcggcatc
gccatgtatcccgaccacggggccgacctggacagcgtggtgcgcagcgccgacatcgcc
atgtatgtggccaaggaagcgggccgccatacgtaccgggtgttccagcccgacatggac
cgccgcaacgcggactacgtgtggctggacaccaatctgcgcaaggcgctggccgagaat
catctgatgctgtactaccagcccaagctggtgggacgcaccggcgaggtggacggcgtg
gaagcgctggtgcgctggcgctctccggagcgcggcatggtcgggcccgacaccttcatt
ccgtatgccgaggagtcgggcctcatctcgccgctgggtgtctgggtgatgcgcgaagcc
gcgcggcaggcggcggcctggaagcgcgacggcctgaacctgcgcatcgccatcaatatg
tcggcccgccagctggacgacaagggcgtggtcagcgaattcatgcgggccatcaacgac
gccagcctcaatccctgccttctcgatatcgaactgacggaaagctgcctgatcgacgat
gaagacgccgccatcgaactcatcaagcagttccggcaactgggcgcgcgcgtgcacctg
gacgacttcggcacgggctattcgtcgctgtcgcagctggcgcgaattccgctggacgcg
atcaagctcgacgccagcttcgtgcgcggcgtgaacgagaatccggtgtcgcaggcgctg
gcgcgcgccatcgtcgcggtggcgcgcacgctggagctcaaggtcatcgccgagggcgtg
gaaacccaggaagaaacggtcttcctggacaccctgggcgtggacgccaagcagggctat
ctgtacgccaagcccatgccggcgcaagagctcaccgcctggctggcgcaacgccgccgg
ctgcatctcattgcgtga
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