Achromobacter sp. E1: V6V88_13370
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Entry
V6V88_13370 CDS
T10430
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
achm Achromobacter sp. E1
Pathway
achm02020
Two-component system
achm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
achm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
V6V88_13370
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
V6V88_13370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
achm03021
]
V6V88_13370
Transcription machinery [BR:
achm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
V6V88_13370
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
XAZ81476
LinkDB
All DBs
Position
complement(2901616..2903061)
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AA seq
481 aa
AA seq
DB search
MQELRLRQQMTLAPRLQQSVKLLQMSALEFTTAVQHALASNPFLEDPDDSELESAAPAAP
GVRGETADIEGQPAPEPVAASDSPEGDEPPPDAPAYSGDYPTHTSSGGDSDLGQWACANV
SMRDRLSFELGNYHLQPRDRLLAEFIIDALDDDGYLRTPLSALCTSADADISPLPEESEW
MAALRLVQQLDAPGIAARDLRECLILQLAALPDEDDDTRSLAQKIVQEHLERLGKNDYVG
LRRALGCGDDALRDACALIRRLDPKPGGRYSGDAPVYVVPDVFVDKWQGRWRVLPNRSAM
PRARLHSAYADLFRRARLDDRSPMAQELQEARWLVRNVEQRYTTIQRVAEAIVKRQQMFF
EYGEVALRPLMLREVADDLNMHESTVSRATVSKYMTTPRGVFEFRHFFSRELATESGGSC
SAAAVRALIKEMVDAEDPAMPLSDVALTQQLASNGILLARRTVSKYRGQLRVPPAELRRQ
H
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaacttcgcctgcgccagcaaatgacgctcgcgccgcgtctgcaacagtccgtc
aagctgcttcagatgtcggcgcttgaattcaccacggccgtgcagcacgcgctggcctca
aacccttttctcgaagatccggacgattcggagctcgagtcggcggccccggctgcgcct
ggcgtccgcggcgagacggcggacatcgaaggacagcccgccccggagcccgttgcggcc
tcggacagcccggaaggcgacgagcccccgcccgacgcgcccgcctattccggcgactac
cccacccacacgtcctcggggggcgacagcgatctgggccaatgggcctgcgccaacgtg
tctatgcgcgatcgcctgtccttcgaactgggcaactatcacctgcagccgcgtgaccgc
ctgctggcggagttcatcatcgacgcgctggacgacgatggctacctgcgcaccccgctc
tccgcgctgtgcacctccgcggatgcggacatcagcccgcttccggaggaatccgaatgg
atggcggcgttgcgcctggtgcagcagctggacgcccccggcatcgccgcgcgcgacttg
cgcgagtgcctgatcctgcagcttgccgcgctgccggatgaagacgacgacacacgctca
ctggcccagaaaatcgtccaggaacatctggagcggctgggcaagaacgattacgtcggt
ctgcgccgcgcgctgggatgcggcgatgacgctctgcgcgacgcctgcgcgctgatccgc
cggctggatcccaagcctggcggccgctacagcggagacgcgccggtgtacgtggtgccg
gatgtcttcgtggacaaatggcagggacgctggcgcgtgttgcccaaccgcagcgcgatg
ccccgcgcgcggttgcacagcgcctacgcggatctctttcgccgtgcccgcctggacgac
cgcagcccgatggcgcaggaactccaggaagcgcgttggctcgtgcgcaatgtcgaacag
cgctacacgacgatccagcgagtcgccgaggccatcgtcaagcgccagcagatgttcttc
gaatatggcgaagtggcgctgcgcccgctcatgctgcgcgaagtggctgacgatctgaac
atgcacgagtccactgtctcgcgcgcgaccgtgagcaagtacatgaccacgccgcgcggc
gttttcgaatttcgccacttcttctcgcgcgaactggccacggagtcgggcggctcgtgt
tcagcggccgcggtgcgcgcgctcatcaaggagatggtggacgccgaagatccggcaatg
cccctgtccgacgttgcgctgacgcagcaactggcctccaacggcatcctgctggcccgc
cgcaccgtgtcgaaataccgcggccaactgcgcgtaccgcccgccgagctgcgccgccag
cactga
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