Achromobacter sp. E1: V6V88_24250
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Entry
V6V88_24250 CDS
T10430
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
achm Achromobacter sp. E1
Pathway
achm02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
achm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
V6V88_24250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
achm03021
]
V6V88_24250
Transcription machinery [BR:
achm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
V6V88_24250
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
HTH_17
Sigma70_ECF
HTH_23
PhyR_sigma-like
Phage_terminase
MerR
AAA_lid_6
Motif
Other DBs
NCBI-ProteinID:
XAZ78322
LinkDB
All DBs
Position
complement(5253391..5253954)
Genome browser
AA seq
187 aa
AA seq
DB search
MSGSEGASQDFESLYGNHHGWLLAWVNWRLGNAADAADLAHDAFVRLLTRPCKFDNARHA
RTYLRRMADGMCIDLWRRRDLEQAWLDALAAQPEPTVSSAEDQAMVLQALGEIDAMLRGL
PPKTAHAFVMAVACEMTDQEVADVLGVSSRMVRKYVAQAMLSCMKLEARLAAGMAGEPAD
TPQVAAP
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
gtgagcggatcggaaggggcatcccaggacttcgaaagcctgtacggcaatcaccacggc
tggctgctggcctgggtgaactggcgcctgggcaatgcggccgatgccgccgacctggcg
cacgacgcgttcgtgcgccttttgacgcgcccgtgcaagttcgacaacgcccggcatgcc
aggacctatctgcgccggatggcagacggcatgtgcatcgacctgtggcgccgccgcgac
ctggagcaggcctggctggacgccctggcggcgcagccggaacccacggtgtcgtcggcc
gaagaccaggccatggtgctgcaggcgctgggcgagatcgatgccatgttgcgcggactg
ccgcccaagaccgcccacgccttcgtgatggcggtggcgtgcgagatgaccgaccaggaa
gtggccgacgtgctgggcgtgtcctcgcgcatggtccgcaagtatgtcgcgcaggccatg
ctgagctgcatgaagctggaagcgcggctggcggcggggatggcgggcgagccggcggac
acgccgcaggtggcggccccatga
DBGET
integrated database retrieval system
