Actinomyces sp. HMT 175: JJJ14_04925
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Entry
JJJ14_04925 CDS
T10480
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
achn Actinomyces sp. HMT 175
Pathway
achn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
achn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JJJ14_04925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
achn03019
]
JJJ14_04925
03009 Ribosome biogenesis [BR:
achn03009
]
JJJ14_04925
Enzymes [BR:
achn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JJJ14_04925
Messenger RNA biogenesis [BR:
achn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JJJ14_04925
Ribosome biogenesis [BR:
achn03009
]
Prokaryotic type
rRNA processing factors
JJJ14_04925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QQQ60137
LinkDB
All DBs
Position
1145731..1148988
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AA seq
1085 aa
AA seq
DB search
MARRTTSESTESFEHGDGEAVSSPAPRRRRRVTAAAAAPAQAPVAEQPGSAGSSETVTTS
GLEEPGVQQAPAAPVAEPVPPRRRRKVVAASAAPEEAPAAEARVADDPDEPGVTEDASSG
EAAQEDLEDQVEGAAEIDETDDEEADQPHEGDEPAGTNLDEEEDLQVPRLPAASLLFQAP
DPSRARRRRRVTAASAAPQEAPTASRHQGAKDEADEGGADARTGAQGHDDDAESESSRAD
RSGGRGRRRRRAAAGTGTPQERREDSSHDGADAEPAEVSEDDGTDSADGTDEARADSSED
AHEGGARRKRRRGGRGRRSRSRGEDPTRADADDESQAAEDDSADETPSRETSSDAAAESA
TSTVSGSRRRRRRSRTRSDSGDLRDEVTALKGSTRLEAKRQRRREGRAAGRRRPIVTEAE
FLARRESVDRQMIVRESDGLNQIAVLEDGLLVEHYVSRHTQTSMVGNVYVGRVQNVLPSM
EAAFVDLGKGRNAVLYAGEVNWDAAGLEGRPRRIEDALSSGDTVLVQVTKDPIGHKGARL
TSQITLAGRYLVLVPGGTMTGISRKLPDTERSRLKKILKRIVPDSAGVIVRTAAEGATQE
QLTADVERLVAQWEAIDKKASSVMKGSGKAPVLLKGEPELAVRVIRDVFNEDFRKLVVSG
DNTWSTISQYIDEVSPDLSERLEHWVGPEDVFAAHRVDEQLAKGFDRKVWLPSGGTLVID
RTEAMTVIDVNTGRFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGMVVIDFVDMVLE
SNRDLVLRRLVECLGRDRTRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTTCEHCKGRGFI
VHDEPVENQQVDMSASASRGGGRSRGRKNREEQATGGGKKETKQDSQETKGSKGSGRGKA
SAGRDVAASPESGVDDEARAAVRGALAQIAAAAEQAHKDSQQEGQESHEDQGAVEAPEAG
VSDTADAAAQTVENGQPADGQDASDVPVEDKPVRSRSRKAADKKPAKKSSEKKSDKVDKK
SGRKTGKKAEKKAAATSEDPVEPQPGEAPSEPAEDKPARRTRRRATAKSAAPSPENSSDT
PEESA
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggcacgtcgcaccacatcagaatcaacagaatccttcgagcacggcgacggtgaggcc
gtgagctccccggctccgcgccgccgccgcagggtcaccgcggccgcggccgcccccgca
caggcccccgttgccgagcagcccggttcggcggggagctcggagaccgtcaccacctcc
ggccttgaggaacccggtgtgcagcaggccccggcagctcctgtggctgagccggtcccg
ccgcgtcggcgccggaaggttgtcgcggcctccgccgctcctgaggaggctcccgccgcc
gaggcccgtgtcgccgacgatcctgacgagccgggcgtgaccgaggatgcatcgagcggc
gaagccgcgcaggaggatctcgaggaccaggtcgagggggcggctgagatcgacgagacc
gacgacgaggaagccgaccagccccacgaaggcgacgagcccgccggcacgaacctcgat
gaggaggaggacctccaggtcccccggcttcctgccgcctcgctcctgttccaggccccc
gaccccagccgggcccgtcggcgtcgtcgggtcaccgcggcgagcgccgctccccaggag
gcgccgaccgcctcgcgtcaccagggagccaaggacgaggcggatgaggggggcgctgac
gcgcggaccggtgcccagggacatgacgatgatgctgagtccgagtcctcccgtgccgac
cgcagtggtggtcgcggccgtcggcgtcggcgggctgccgccggtaccgggaccccgcag
gagcgccgcgaggactcctcccacgacggggctgacgccgagcccgccgaggtctcagag
gacgatggcactgacagtgctgacgggaccgatgaggcccgggccgattcttcggaggac
gcccacgagggcggggcccgccgcaagcggcgccgtggcgggcgcggtcggcgctcgcgc
tcgcggggtgaggacccgacgcgcgccgatgccgatgatgagtcgcaggccgcggaggat
gacagcgccgatgagactccctcgcgtgagacctcctccgatgccgctgcagagagcgcc
acgagtaccgtgtccggatcgcgccgccggcgacgtcgctcccgtacccgctcggacagt
ggtgacctgcgtgacgaggtgaccgccctcaaggggtccacccgcctggaggccaaacgt
cagcgccgccgcgagggcagggcggccgggcgccgtcgtcccatcgtcactgaggccgag
ttcctggcccgtcgcgagtccgtggaccggcagatgatcgtgcgcgagtccgacggtctc
aaccagatcgccgtcctggaggacgggctcctcgtggagcactacgtctcccggcacacc
cagacttccatggtcggcaatgtctacgtcggccgggttcagaacgtcctgccctccatg
gaggccgccttcgtggatctgggcaaggggcgcaacgccgtcctctacgccggcgaggtc
aactgggacgccgccggcctggagggcaggccccgccgtatcgaggacgccctctccagc
ggcgacaccgtcctggtccaggtcaccaaggaccccatcggccacaagggcgcccggctc
accagccagatcaccctggcgggccgatacctggtcctggtccccggcggcaccatgaca
ggtatctcgcgcaagctgccggataccgagcgcagccgcctgaagaagatcctcaagcgg
atcgtgcccgactcggccggagtcatcgtgcgtaccgccgcggagggggccacccaggag
cagctgaccgccgacgtcgagcgcctcgtggcccagtgggaggccatcgacaagaaggcg
tcctccgtcatgaagggcagcggcaaggcccccgtcctgctcaagggtgagcccgagctc
gccgtgagagtcatccgcgacgtcttcaacgaggacttccgcaagctcgtcgtctccggg
gacaacacctggtccacgatctcgcagtacatcgacgaggtcagcccggatctgtccgag
cgcctcgagcactgggtcgggcccgaggacgtcttcgccgcccaccgcgtcgacgagcag
ctcgccaagggcttcgaccgcaaggtctggctccccagcggcggcaccctggtcatcgac
cgcaccgaggcgatgaccgtcatcgacgtcaataccgggcgcttcaccggcgcggggggc
acgctggaggagaccgtcacccgcaacaacctggaggccgccgaggagatcgtccgccag
ctgcgcctgcgcgacatcggcggcatggtcgtcatcgacttcgtcgacatggtcctggag
tccaaccgggacctcgtgctgcgccggctcgtggagtgcctggggcgcgaccggacacgc
caccaggtcaccgaggtcacctcgctgggactggtccagatgacccgcaaacgggtgggg
cagggcctggtcgaggccttctccaccacctgcgagcactgcaagggccggggcttcatc
gttcacgacgagcccgtggagaaccagcaggtcgacatgtcggcctccgcctcacgcggc
ggcggacgctcgcgcggacgcaagaaccgtgaggagcaggctaccggcgggggcaagaag
gagaccaagcaggattcccaggagaccaagggctccaagggctccggtcgcggcaaggca
tcggcagggcgcgacgtcgccgcatcgcccgagtccggagtagacgacgaggcccgggcg
gcagtgcgaggcgctctggcccagatcgcggccgccgccgagcaggctcacaaggacagc
cagcaggaggggcaggagtctcatgaggatcagggggccgttgaggccccggaggccggc
gtgagtgacaccgccgacgctgcggcgcagaccgtggagaacgggcagcccgccgatggc
caggatgcttcggatgtcccggtcgaggacaagccggtcaggagccggtcgaggaaggcg
gctgacaagaagccggcgaagaagtccagtgagaagaagagcgacaaggtggacaagaag
tcggggaggaagaccggcaagaaggccgagaagaaggctgccgcgacctccgaggacccc
gttgagccgcagcccggcgaggcgccgtcggagccggctgaggacaagccggcgaggagg
acacgacggcgggccacggccaagagcgccgcgccctcaccggagaattcttcagacacc
ccggaggagtcggcctga
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