Actinomyces sp. HMT 175: JJJ14_10935
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Entry
JJJ14_10935 CDS
T10480
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
achn Actinomyces sp. HMT 175
Pathway
achn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
achn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JJJ14_10935 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
achn03400
]
JJJ14_10935 (mfd)
Enzymes [BR:
achn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JJJ14_10935 (mfd)
DNA repair and recombination proteins [BR:
achn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JJJ14_10935 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
VBS_C3G9
Motif
Other DBs
NCBI-ProteinID:
QQQ58992
LinkDB
All DBs
Position
complement(2610565..2614332)
Genome browser
AA seq
1255 aa
AA seq
DB search
MLLTALLPPLLADADIARTVRASSSRSRTDRSLVVAPGARPAVLAAMALGEEGVQRVAGG
DAPATGSAEASGTPLLVVTATGREAEETALALRSYLPAHDVAVMPAWETLPHERLSPRAD
TVAQRLSVLRRLAHPEEGGAIRVLIVPVRALLAPVIAGLGELEPVQLAPGLTVGLEETAR
RLEAAAYTRVDMVESRGEYAVRGGILDVFPPSEPRPVRVDFFGDEIDEVSSFAVADQRTI
ETLGAVTATACRELVLTDAVRERAAALADAVPGAADMLEKISQGIAVEGMESLAPVLVEK
MVPLLDLVGDRLTVLLEPERVRKRAEDLTATTTEFLAAAWTSAASGGTVPVDLSAAAFAH
LAEARALALSSNRGWWSFTALAAGPETTRLDLSDPHTYRGELERAVADLGRMARQGWTVV
VATDGPGPGRRMAQLLGDGDVPARIVDQLSEVGELGRDSDWAPDPATPAEDTVDETDADG
SAGAPTAGPGDGVVRVTQASAGHGFLAEGLRLALIAESDLTGRASAGPRERRSLPARRAR
RSVDPLSLHAGDLVVHAQHGVGRFIELSRRTVGGPRSSATREYLVIEYAPSKRGQPGDRL
LVPTDALDQVTKYVGGDSPALSKMGGADWAKTKSKARKAVREIAGELVRLYAARAATTGH
AFSPDTPWQTELEEAFPYTETPDQLSTIDEVKADMEKAQPMDRLVCGDVGYGKTEIAVRA
AFKAVQDGKQVAVLVPTTLLVSQHAETFTERYAGFPVTVAALSRFQDATESAKILEGLEK
GSVDVVVGTHRLITGQVKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSMSATPIPR
TLEMAVTGLREMSTLATPPEDRHPILTYVGAYETKQVSAAIRRELLREGQVFFVHNRVED
IDATAARLAELVPEARVATAHGQMNEHQLEAVIDSFWRKETDVLVCTTIVETGLDVSNAN
TLIVDRADRMGLSQLHQLRGRVGRGRERAYAYFLYPSDKPLTETALERLRTIATNTDLGA
GMQVAMKDLEIRGSGNLLGGEQSGHIAGVGFDLYVRMVSEAVAAYKKALARSGKAGADVT
GFEEGDEEDVELRIELPVDATVPEDYIPHERLRLEAYTKFAAARSGEQVDDVLEELADRY
GPVPEATARLAALARLRALAAELGVREIVAQGKSVRFAPVDLPESARMKVTRLYPGTVLK
PATRTIVVPAPGTNRMGGAALSGEEVVRWAEVLLRAVVQGDTSYETEATTYRKRR
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
gtgctcctgactgcgctcctgcctccgctgctcgccgacgccgacatcgcccgcaccgtt
cgcgcctcctcctcccgctcgcgcactgaccgcagcctcgtggtggcgccgggcgcccga
cccgctgtcctggccgccatggccctgggcgaggagggtgtccaacgggtcgccggcggc
gacgcgccggcgaccggctccgccgaggcctccggcacgcccctgctggtcgttaccgcc
accggccgcgaggccgaggagacggccctggcgttgcgcagctacctgccggcgcacgac
gtcgccgtcatgcccgcctgggagaccctgccccacgagcgcctctcgccgcgcgccgac
accgtcgcccagcgcctgtccgtcctgcgccgcctggcccaccccgaggaaggcggggcg
atccgcgtcctcatcgtccccgtgcgcgccctgctggcccccgtcatcgccgggctcggc
gagcttgaacccgtccagctggcccccggtctgaccgtcggcctggaggagacggcccgc
cgcctggaggccgccgcctacacgcgcgtcgacatggtcgagtcccgcggcgagtacgcc
gtgcgcggcggcatcctcgacgtcttcccgccctccgagccccggccggtgcgcgtggac
ttcttcggcgacgagatcgacgaggtctcctccttcgccgtcgccgaccagcgcaccatc
gagacgctgggcgctgtcaccgccaccgcctgccgcgagctggtcctcaccgacgcggtg
cgcgagcgcgccgccgccctggccgacgccgtccccggcgccgccgacatgcttgagaag
atcagccagggcatcgccgtggagggcatggagtccctcgccccggtgctggttgagaag
atggtcccgctgctggacctcgtcggtgaccggctcacggtgctgctggagcccgagcgg
gtgcgcaagcgcgccgaggacctgaccgccaccaccaccgagttcctcgccgccgcctgg
acctcggcggcctccggcggcacagtccccgtcgacctgtccgccgccgccttcgcccat
ctggccgaggcccgggccctggccctgtcctccaaccgcggctggtggtccttcaccgcc
ctggccgccggccccgagaccacccgcctggacctcagcgacccccacacctaccgcggc
gagctcgagcgggccgtggccgacctgggacggatggcccgccagggctggaccgtcgtc
gtggccaccgacgggcccggacccggccggcgcatggcccagctcctgggcgacggcgac
gtccccgcccgcatcgtcgaccagctctcggaggtcggcgagctcggccgcgacagtgac
tgggcccccgacccggccacccctgccgaggacacggtcgacgagaccgacgccgacggc
tcggccggcgccccgacagcgggccccggcgacggcgtcgtgcgcgtcacccaggccagc
gccggccacggcttcctcgccgagggcctgcgcctggccctcatcgccgagtccgacctc
accgggcgggcctcggcaggcccccgcgagcgccgcagcctgccggcccgtcgcgcccgc
cgttccgtggaccccctgtccctgcacgccggggacctcgtggtccacgcccagcacggg
gtggggcgcttcatcgagctgagccggcgcaccgtgggcggtccccgctcctcggccacc
cgcgagtacctcgtcatcgagtacgcgccctccaagcgcggccagcccggcgaccgcctc
ctggtgcccaccgacgccctggaccaggtcaccaagtacgtcggcggcgacagccccgcc
ctgagcaagatgggcggcgccgactgggccaagaccaagtccaaggcccgcaaggccgtg
cgcgagatcgccggtgagctcgtgcgcctctacgccgctcgcgccgccaccaccggtcac
gccttcagccccgacaccccctggcagaccgagctggaggaggccttcccgtacaccgag
acccccgaccagctctccaccatcgacgaggtcaaggccgacatggagaaggcccagccg
atggaccggctcgtgtgcggcgacgtcggctacggcaagaccgagatcgccgtgcgtgcc
gccttcaaggccgtgcaggacggaaagcaggtcgcagtcctggtgcccaccacgctcctg
gtgagccagcacgccgagaccttcaccgagcgctacgccggcttcccggtgaccgtggcg
gccctgtcccgcttccaggacgccaccgagtccgccaagatccttgaggggctggagaag
gggagcgtcgacgtcgtcgtcggcacccaccgcctcatcaccggccaggtgaagttcaag
gacctgggcctggtcatcatcgacgaggagcagcgcttcggggtggagcacaaggagacc
ctcaaggcgctgcgcaccaacgtggacgtcctgtccatgtccgccaccccgatcccgcgg
actctggagatggcggtcaccggcttgcgcgagatgtccaccctggcgaccccgcccgag
gaccgccacccgatcctgacctacgtgggcgcctacgagaccaaacaggtctccgccgcg
atccgccgcgagctgctgcgcgaagggcaggtgttcttcgtccacaaccgggtcgaggac
atcgacgccaccgccgcgcgcctggccgagctggtgcccgaggcgcgcgtggccaccgcc
cacggacagatgaacgagcaccagctcgaggccgtcatcgactccttctggcgcaaggag
accgacgtgctcgtgtgcaccacgatcgtggaaaccgggctggacgtgtccaacgccaac
accctcatcgtggaccgcgccgaccgcatgggcctgtcccagctccaccagctgcgcggg
cgcgtggggcgcggccgggagcgggcctacgcctacttcctctacccctcggacaagccg
ctgaccgagacggccctggagcgcctgcgcaccatcgccaccaacacggatcttggggcc
gggatgcaggtggccatgaaggacctggagatccgcggctcgggcaacctgctcggcggc
gagcagtccgggcacatcgccggggtcggcttcgacctgtacgtgcggatggtctccgag
gccgtggccgcctacaagaaggccctggcccgctccgggaaggccggggccgacgtgacc
ggcttcgaggagggtgacgaggaggacgtcgagctgcgcatcgagctgcccgtggacgcc
accgtccccgaggactacatcccccacgagcgcctgcgcctggaggcctacaccaagttc
gcggcggcgcgctcgggggagcaggtcgacgacgtcctggaggagctggccgaccgctac
gggcccgtgccggaggcgactgcccgtctggcggcgctggcgcggctgcgggccctggcc
gccgagctgggggtgcgcgagatcgtcgcccagggcaagtcggtgcgcttcgcgccggtg
gacctgcccgagtcggcgcgcatgaaggtcacccgcctctatccggggaccgtgctgaag
cccgccacgcgcaccatcgtggtgcccgcgccgggtaccaaccgcatgggcggggcggcc
ctgtccggcgaggaggtcgtgcggtgggccgaggtgctcctgcgcgccgtcgtccagggc
gacacctcctacgagaccgaggccaccacctaccgcaagcgccgctga
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