Achromobacter sp. 77: H4P35_04400
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Entry
H4P35_04400 CDS
T08458
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
acho
Achromobacter sp. 77
Pathway
acho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4P35_04400 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acho03019
]
H4P35_04400 (recQ)
03400 DNA repair and recombination proteins [BR:
acho03400
]
H4P35_04400 (recQ)
Enzymes [BR:
acho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H4P35_04400 (recQ)
Messenger RNA biogenesis [BR:
acho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H4P35_04400 (recQ)
DNA repair and recombination proteins [BR:
acho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
H4P35_04400 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
UDG76605
LinkDB
All DBs
Position
complement(985514..987343)
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AA seq
609 aa
AA seq
DB search
MSDARALGVLQRVFGYESFRGDQQAIVDQVIGGGDALVLIPTGGGKSLCYQIPSLVREGT
GIVVSPLIALMQDQVDALTELGVRAAFLNSTQEWRVARDVEQAFLDGELDLLYVAPERLL
TDRCLQLLDRGRIALFAIDEAHCVSQWGHDFRPEYLGLSMLHERWPDVPRIALTATATAV
TRTEIAQRLSLDEARHFVSSFDRPNIRYRIVEKNEVRKQLLDMIRTEHEGESGVVYCLSR
ARVEETAEFLCNQGIDAMPYHAGLSAQVRAANQSRFLREDGVVMVATIAFGMGIDKPDVR
FVAHIDLPKSVEGYYQETGRAGRDGLPATAWLAYGLQDVVQQRRMIDESPGDESYRRRLG
QQLDAMLGLCETVECRRVRLLAYFGQQITACGNCDVCLDPPQAWDGTVAAQKVLSAVYRL
WKERGQRYGAGHIIDILRGKVTDRTQQHGHETLSVFGVGADLSDTAWRGVLRQLLAQGLL
TVDNEGFGTLALTEGSRAVLKGERQLMLRRESEKKPRSGKTGSGRPKAAAIDLPAELQPV
FEALRAWRGEVAKSHGVPAYVIFHDATLREIALAQPESMDDLSHINGVGARKLEAYGEEI
LQRVARPVL
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgcgcgcgccctcggcgtgttgcagcgcgttttcggttacgaatccttccgc
ggcgaccagcaagccattgtcgatcaggtgatcggcggcggcgacgccctcgtcctcatt
cccaccggcggcggcaagtcgctgtgctaccagattccctcgctggtgcgcgaaggcacg
ggcattgtcgtgtcgcccctgatcgcgctgatgcaggaccaggtcgacgccctgacggaa
ctgggcgtgcgcgcggcgttcctgaattcgacgcaggaatggcgcgtggcccgcgacgtg
gagcaggcgttcctggatggcgagctcgacctgctgtatgtcgcgcccgaacgcctcctg
accgaccgctgcctgcagttgctggaccgcggccgcatcgcgctgttcgcgatcgacgaa
gcacattgcgtgtcccaatggggtcacgatttccgtcccgaatacctgggcctgtccatg
ctgcacgagcgctggccggacgtgccgcgcatcgcgctcacggccaccgccaccgccgtc
acccgtaccgagatcgcgcagcgtctgtcgctggacgaagcccgccatttcgtctcgagc
ttcgaccgccccaacatccgctaccgcatcgtcgaaaagaacgaggtgcgcaagcagctg
ctggacatgatccgcaccgagcacgaaggcgaatccggcgtggtgtactgcctgtcgcgc
gcccgggtggaagaaacggccgaattcctgtgcaaccagggcatcgatgcgatgccgtac
cacgcggggctgagcgcccaggtgcgggcggccaaccagtcgcgcttcctgcgcgaggac
ggcgtggtgatggtcgccaccattgcgttcggcatgggcatcgacaagccggacgtgcgc
ttcgtggcgcacatcgacctgcccaagtcggtcgaaggctactaccaggaaacgggccgc
gccggccgcgacggcctgcccgccaccgcatggctggcctacggcttgcaggacgtggtg
cagcagcgccgcatgatcgacgaatcgcctggcgacgagtcctatcgccggcgcctgggc
cagcagctcgacgccatgctgggcctgtgcgaaaccgtggaatgccggcgcgtgcgcctg
ctggcgtactttggccagcagatcaccgcgtgcggcaactgcgacgtctgcctggatccg
ccccaggcgtgggacggcaccgtcgcggcgcagaaggtgctgtcggcggtgtaccggctc
tggaaggaacgtggccagcgctatggcgccggccacatcatcgacatcctgcgcggcaag
gtcaccgatcgcacccagcagcatggccacgagacgctcagcgtattcggcgtgggcgcc
gacctgtccgacaccgcctggcgcggcgtgctgcgccagctattggcgcagggcctcctg
acggtggacaacgaaggcttcggcacgctggccctgaccgaaggcagccgcgccgtgctc
aagggcgaacgccagctcatgctgcgacgcgagtccgaaaagaaaccgcggtccggcaag
acgggcagcggacggcccaaggcggcggcgatcgacctgccggccgaattgcagcccgtg
ttcgaagccctgcgcgcgtggcgcggcgaagtcgccaagagccacggcgtgcccgcctac
gtgatctttcacgacgccacgctgcgcgagatcgcgctggcgcagcccgagtccatggac
gacctgagccacatcaacggcgtgggggcccgcaagctggaagcctacggcgaagaaatc
ctgcagcgggtggcgcggccggtgctgtag
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