Achromobacter sp. 77: H4P35_04540
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Entry
H4P35_04540 CDS
T08458
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
acho
Achromobacter sp. 77
Pathway
acho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4P35_04540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acho03019
]
H4P35_04540
Enzymes [BR:
acho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H4P35_04540
Messenger RNA biogenesis [BR:
acho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H4P35_04540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
LBP_BPI_CETP_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UDG76631
LinkDB
All DBs
Position
1016418..1017890
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AA seq
490 aa
AA seq
DB search
MTESTQTVAPTADAPAPTFDDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVSGRDVMGA
AQTGTGKTAAFTVPILHRLMPLANTSASPARHPVRALILAPTRELADQVFESVKRYSKKT
PLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRML
DMGFLPDLERIIRLLPAQRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATATTITQ
IAYKMTSDAKRAAVVHLVKSRGLNQVIVFSNTKIGTARLARDLERDGVKAESIHGDKTQA
DRMKALEAFKAGELEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGAS
GEAIALFTSDEERFLLDIEKLIKREVPRGTLDVPADLIARSHRRSDSSSHSREGREGGRE
SRGDRGRSSERRSSHHSGGSRQPVDDFFFKPYEPSAPVAPAEEQESRGNATPSSAPKRQL
AVLLGGSRKP
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgactgaatccactcaaaccgtagcacccaccgctgacgcgcccgcgccgacgttcgac
gatttcgggttgcaccccctgttgttgcagtccatcgccgaaaccggctacaccaccccg
acgcccatccaggcgcaagccattcccgtggtggtgtcgggccgcgacgtcatgggcgct
gcccagaccggcaccggcaagacggcggcgttcacggtcccgatcctgcatcgcctcatg
ccgctggccaacaccagcgcttcgcccgcccggcatccggtgcgcgcgctgatcctggcg
cccacgcgcgaactcgcggaccaggtcttcgagagcgtcaagcgctacagcaagaagacg
ccgctgcgctcggccgtggtgttcggcggcgtggatatcggtccgcaaaaggaagcgctg
cgccgcggctgcgaagtgctggttgccacgccgggccgtctgctcgatcacgttgaacag
aagaacgtgaacctcagccaggtcggcatcctggtgctggacgaagcggaccgcatgctc
gacatgggcttcctgcccgatctggaacgcatcatccgcctgctgcccgcgcagcgtcag
ggccttttgttctcggccactttcagcaacgagatccgcaagctgggccggtcgtacctg
aaccaccccgtcgaaatcgaagtggcggcgcgcaacgccaccgccacgaccatcacgcag
atcgcctacaagatgaccagcgacgccaagcgcgccgccgtcgtgcatctggtgaagtcg
cgcggcctcaatcaggtcatcgtcttctcgaacaccaagatcggcaccgcacgcctggcg
cgcgacctggaacgtgatggcgtcaaggccgaatcgatccacggcgacaagacccaggcc
gaccgcatgaaggcccttgaggccttcaaggccggcgaactcgaagtgctggtcgccacc
gacgtggcggcgcgtggcctggatgtggccggcgtgccctgcgtcatcaactacgacctg
ccgtacaacgccgaagactacgtgcaccgcatcggccgtaccggccgcgcgggcgcatcg
ggcgaagccattgcgctgtttacctccgacgaagagcgcttcctgctcgacatcgagaag
ctcatcaagcgcgaagtgccgcgcggcacgctcgacgtgccggccgacctgatcgcgcgc
agccatcgccgcagcgacagcagctcgcattcgcgcgaagggcgcgaaggcggccgcgaa
agccgcggcgaccggggccgttcttccgagcgccgttccagtcaccattccggcggctcg
cgccagcccgtggacgacttcttcttcaagccctacgagccctcggcgcccgtcgcgccg
gccgaagaacaggaatcgcgcggcaacgccacgccgtcgtccgcgcccaagcgccaattg
gccgttctgcttggcggcagccgcaagccctga
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