Achromobacter sp. 77: H4P35_08500
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Entry
H4P35_08500 CDS
T08458
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
acho
Achromobacter sp. 77
Pathway
acho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4P35_08500 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acho03021
]
H4P35_08500 (rho)
03019 Messenger RNA biogenesis [BR:
acho03019
]
H4P35_08500 (rho)
Transcription machinery [BR:
acho03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
H4P35_08500 (rho)
Messenger RNA biogenesis [BR:
acho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
H4P35_08500 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
NACHT
S1CSD-TOTE-2
Phostensin_N
Motif
Other DBs
NCBI-ProteinID:
UDG77353
LinkDB
All DBs
Position
complement(1848607..1849866)
Genome browser
AA seq
419 aa
AA seq
DB search
MHLNELKALHVSQLLEMAAGLEIENANRLRKQELMFAIMKRRAKQGEQIFGDGVLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GVAPEAIKHRIMFENLTPLHPNRVIRLERDIKSEENLTGRILDVFAPIGMGQRGLIVASP
KSGKTVMMQHIAHAITTNYPDAVMIVLLVDERPEEVTEMQRTVRGEVVASTFDEPATRHV
QVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNLEEGGSLTILGTALIETGSRMDEVIYEEFKGTGNSEVHLERRLAEKRVYPSINL
NKSGTRREELLIAPDLLQKVWVLRKFIHDMDEVQSMEFILDKMRATKTNAEFFDMMKKK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcacctcaacgaactgaaggcgctgcacgtctcgcagctgctcgaaatggccgctggc
ctggaaatcgaaaacgccaaccgcctgcgcaagcaggaactgatgttcgccatcatgaag
cggcgcgccaagcaaggcgagcagatcttcggcgacggcgttcttgaagtcctgcccgac
ggcttcggtttcctgcgctcgccggaaacctcgtatctggccagcaccgacgacatctac
atttctccgtcgcagatccgccgcttcaatctgcacaccggcgactccatcgaaggcgaa
gtgcgcacccccaaggatggcgagcgctactttgccctggtgaaggtggacaaggtcaac
ggcgtggcgcccgaggcgatcaagcatcgcatcatgttcgagaacctgacgccgctgcac
ccgaatcgcgtcatccgcctggaacgcgacatcaagagcgaggaaaacctcactggccgg
atcctcgacgtcttcgccccgatcggcatgggccagcgcggcctgatcgtcgccagcccc
aagtccggcaagacggtgatgatgcagcacattgcgcacgccatcaccaccaactacccc
gacgcggtcatgatcgtcctgctggtcgacgaacgcccggaagaagtgaccgaaatgcag
cgcacggtgcgcggtgaagtcgtggcctcgaccttcgacgagcccgccacccgtcacgtg
caagtggccgaaatggtcatcgagaaggccaagcgcctggtcgaaatgaagaaggacgtc
gtgatcctgctggactcgatcacccgtctggcccgcgcctacaacaccgtcgtgccggcc
tccggcaaggtgctgaccggcggcgtggacgccaacgccctgcagcgccccaagcgcttc
ttcggcgcggcgcgcaacctggaagaaggcggctcgctcaccatcctgggcaccgcgctg
atcgaaaccggcagccgcatggatgaagtcatctatgaagaattcaagggcaccggcaac
tccgaagtccacctcgagcgccgcctggccgaaaagcgcgtctacccgtccatcaatctg
aacaagtcgggcacccgccgcgaagagctgctgatcgcccccgacctgctccagaaggtg
tgggtgctgcgcaagttcattcacgacatggacgaagtccagtccatggaattcatcctg
gacaagatgcgcgccaccaagaccaacgccgaattcttcgacatgatgaagaagaagtaa
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