Achromobacter sp. 77: H4P35_12300
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Entry
H4P35_12300 CDS
T08458
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
acho
Achromobacter sp. 77
Brite
KEGG Orthology (KO) [BR:
acho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
acho03009
]
H4P35_12300 (rlmD)
Enzymes [BR:
acho01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
H4P35_12300 (rlmD)
Ribosome biogenesis [BR:
acho03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
H4P35_12300 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_25
RrnaAD
Methyltransf_23
TRM5-TYW2_MTfase
Methyltransf_31
Methyltr_RsmB-F
Methyltransf_32
Motif
Other DBs
NCBI-ProteinID:
UDG78052
LinkDB
All DBs
Position
2658759..2660252
Genome browser
AA seq
497 aa
AA seq
DB search
MSDVLNIESLDLEARGIARRDGKVIFVEGALPGERVTAVTLRRKPSYETARVDEVLHPSS
QRVVPRCPHFGVCGGCAMQHLEPTTQVAIKQRALEDTFWHVGKLRPALILAPLQGPTWGY
RYRARLSVRVVPKKGGVLVGFHERKSSYVADMRECHVLPRHVSDLLIPLREMIASMSAPD
RMPQIEVALGEGVTALVLRHLLPLTDGDIAILRAFAAKHDVQWWLQAKGPDTVHPLEREH
NDTLSYTMPEFGLRMPYRPTDFTQVNHAINRAMVSRALKLLEVQPTDRVADLFCGLGNFT
LPLATQGREAVGVEGSKALTDRAFDAASRHGLGDRTSFATLNLFEVDATWLRSLGYFDRM
LIDPPREGAHAVSQALSDLSYEERPRRIVYVSCNPATLARDAAILVHEGGYVLKSAGVIN
MFPHTGHVESIAVFETLDAQGVLEAKARARERAANAAAEAAAAEQARLAAAAEKAAAKQA
ATEAYEARVAAEAQPGQ
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgttttgaatatcgaatccctggacctggaagccagggggatcgcccgccgc
gacgggaaggtcattttcgtggaaggcgccttgccgggcgaacgggtcaccgcggtcacg
ctgcgccgcaagccctcctacgagacggctcgggtggacgaggtactgcatccttcgtcg
caacgcgtggtgccccgctgcccgcatttcggcgtctgtggcggctgtgccatgcagcat
ctggaacccaccacgcaggtggccatcaagcagcgcgcgctggaagacaccttctggcat
gtcggcaagctgcgtccggcgctcatcctggcgccgctgcagggcccgacctggggttac
cgctaccgcgcgcgtctgtccgtgcgcgtggtgcccaagaagggcggggtgctcgtgggc
tttcacgaacgcaagagcagctacgtggccgacatgcgcgaatgccatgtgctgccccgc
cacgtcagcgatctgctgatcccgctgcgcgaaatgatcgcctcgatgtccgcgccggac
cgcatgccgcagatcgaagtggcgctcggcgagggcgtgacggcgctggtgctgcggcat
ctgctgccgctcaccgacggcgacatcgcgatcctgcgcgcctttgcggccaagcacgac
gtgcaatggtggttgcaggccaagggccctgacacggtgcacccgctggagcgcgagcac
aacgacacgctgtcctacaccatgccggaattcggcctgcgcatgccttaccgtccgacc
gacttcacgcaggtgaaccacgccatcaaccgggcgatggtgtcgcgggcgctcaagctg
ctggaagtgcagcccaccgaccgcgtggccgacctgttctgtggcctgggcaacttcacg
ttgccgctggccacgcaaggccgagaggccgtcggcgtggaaggcagcaaggcgctgacc
gatcgcgcgttcgacgcggcatcgcgccacggcctgggcgatcgcaccagcttcgccacc
ctgaacctcttcgaagtcgacgccacttggctgcgcagcctgggctacttcgaccgcatg
ctgatcgatccgccgcgcgaaggcgcgcacgcggtgtcgcaggcgctatccgacctgtcg
tacgaagaacgtccgcgccgcattgtctacgtgtcctgtaacccggccacgctggcgcgg
gacgcggccatcctggttcacgaaggcggctacgtgctcaagagcgcgggcgtgatcaac
atgttcccgcacaccggccatgtggaatccatcgccgtgttcgagacgctggacgcgcag
ggcgtgctggaagcgaaagcgcgcgcccgtgagcgtgcggccaacgcggcagccgaagcg
gcggctgccgagcaagccaggctagccgcggcggccgaaaaggcggcggccaagcaggcc
gccaccgaggcctacgaggcgcgcgtcgccgccgaggcgcagccgggtcagtaa
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