Achromobacter sp. AONIH1: C2U31_04540
Help
Entry
C2U31_04540 CDS
T05288
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
achr
Achromobacter sp. AONIH1
Pathway
achr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
achr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C2U31_04540 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
achr03021
]
C2U31_04540 (rpoB)
03400 DNA repair and recombination proteins [BR:
achr03400
]
C2U31_04540 (rpoB)
Enzymes [BR:
achr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C2U31_04540 (rpoB)
Transcription machinery [BR:
achr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C2U31_04540 (rpoB)
DNA repair and recombination proteins [BR:
achr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C2U31_04540 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AUT45309
UniProt:
A0A2I8DDK9
LinkDB
All DBs
Position
complement(983329..987441)
Genome browser
AA seq
1370 aa
AA seq
DB search
MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQADTAPSERVADGLQAAFTSI
FPIVSHNGMARLEFVSYVLGEPVFDVKECQQRGLTYASPLRAKVRLVLLDREVSKPTVKE
VKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILCKAIGMTPETILANFFDFDNFELKSEG
AMMEFVPERWKGEMARFDISDRSGKVIVEKDKRINTKHLRDLAAGGIQRISVPEEFLYGR
VLAKNIVDADTGEVIANANDEITESVLAALRAANVHDIQTLYTNDLDRGPYISQTLRTDE
TADQMAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEETYDLSRVGRMKVNSRLGRGEDI
TGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETPYRKI
IDGKVSDQIDYLSAIEESHYVIAQANAALDEDGRFVDDLVACREAGETMLTAPANVHYMD
VAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPVVGTGIERTVAVDSGT
TVQALRGGLVDHVDAERVVIRVNDDENVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKRG
DRVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSVHIE
ELTVVARDTKLGPEEITRDISNLAETQLNRLDDSGICYIGAEVSADDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIIDDELR
RYRQDLNDQLRIVENDQFDRIEKLLVGKTVNGGPRKLAKGATITKAYLADLDRWQWFDIR
LADEPHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVKRRLQ
PGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWAA
KGVGHRIADMLRDERTAQVKNVRAYLDKVYNTTGSGARIDELTDDEVMEMAQNLKNGVPF
ATPVFDGATEEEITTMLELAYPDDVAKRMQLTPSRTQAWLFDGRTGEKFERPVTVGYMHY
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLT
VKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgccttactcgtacaccgaaaaaaagcgcatccgcaaaagcttcgccaagcgtgaagac
gttcaaaacgttcctttcctgctggcgactcagcttcaatcctacctaactttcctgcag
gcggataccgccccgtccgaacgcgtagccgacggtttgcaggcggcgttcacgtcgatt
ttcccgatcgttagtcacaacggtatggcgcgcttggagttcgtgagctatgtgctcggc
gaaccggtgttcgatgtcaaggaatgtcagcaacgtggcctgacctatgcgtcgcccctg
cgcgcgaaggtgcgcctggtgctgctcgaccgcgaggtcagcaagcccacggtcaaggaa
gtcaaggaacaggaagtctacatgggcgagattccgctcatgaccggcaccggttccttc
gtcatcaacggcaccgagcgcgtcatcgtgtcgcagctgcaccgctcgcccggcgtgttc
ttcgagcacgaccgcggcaagacccacagctccggcaagctcctgttctcggcccgcgtg
attccttaccgcggttcgtggctggactttgaattcgacccgaaggacgtgctgttcttc
cgcgtcgaccgtcgccgcaagatgcccgtcacgatcctgtgcaaggccatcggcatgacg
ccggaaaccatcctggccaacttcttcgacttcgataatttcgagctgaagagcgaaggc
gcgatgatggaattcgtgcccgagcgctggaagggcgaaatggcccgtttcgacatctcg
gaccgctccggcaaggtcatcgtcgaaaaggacaagcgcatcaacaccaagcacctgcgc
gatctggctgccggcggcatccagcgcatctcggtgcctgaagagttcctgtacggccgc
gtgctggccaagaacatcgttgacgcggacaccggcgaggtcatcgccaacgccaacgac
gagatcacggaaagcgtgctggccgccctgcgcgccgccaacgtgcacgacatccagacg
ctctacacgaacgacctggaccgcggtccctacatctcgcagaccctgcgcaccgacgaa
accgccgaccagatggccgcgcgcgtggcgatctaccgcatgatgcgccccggcgagccg
cccaccgaggaagccgtcgaggccctattccagcgcctgttctacagcgaagagacgtac
gacctgtcgcgcgtcggccgcatgaaggtcaacagccgtctgggccgtggcgaggacatc
accggtccgatgacgctgaccaacgaagacatccttgaaaccatcaaggtgctggtcgag
ctgcgtaacggccgtggccagatcgatgacatcgatcacctgggcaaccgccgcgtgcgc
tgcgtgggcgaactggccgagaaccagttccgcgccggcctggtgcgcgtcgagcgcgcc
gtcaaggaacgtctgggccaggccgagaccgaaaacctgatgccgcacgacctgatcaac
tccaagccgatttcggccgccatcaaggagttcttcggttcgagccagctgtcgcagttc
atggaccagaccaacccgctgtcggaaatcacgcacaagcgtcgcgtttccgcactgggc
ccgggcggtctgacccgcgagcgcgccggcttcgaagtccgcgacgtgcacccgacccac
tacggccgcgtctgcccgatcgaaacgccggaaggcccgaacatcggcctgatcaactcc
atggcgctgtacgctcgcctgaacgagtacggcttcctggaaacgccttaccgcaagatc
atcgacggcaaggtcagcgaccagatcgactacctgtcggccatcgaggaaagccactac
gtcatcgcgcaggccaacgccgcgctggacgaagacggccgtttcgtcgacgacctggtg
gcctgccgcgaagcgggcgaaaccatgctgaccgcgccggccaacgtgcactacatggac
gtggccccgtcgcagatcgtgtcggtcgcggcctcgctgattccgttcctggagcacgac
gacgcgaaccgcgcgctgatgggcgccaacatgcaacgtcaggccgtgccttgcctgcgt
ccggaaaagccggtcgtgggtacgggcatcgagcgcaccgtggccgttgactcgggcacc
accgtgcaggcgctgcgtggcggtctggtcgaccatgtcgacgccgaacgcgtggttatc
cgcgtgaacgacgatgaaaacgtggccggcgaagtcggcgtggacatctacaacctgatc
aagtacacgcgttccaaccagaacacgaacatcaaccagcgtcccatcgtcaagcgcggc
gatcgcgtcgccaagggtgacgtgctggccgacggcgcgtcgacggacctgggcgaactc
gccctgggccagaacatgctgatcgcgttcatgccctggaacggctacaacttcgaagac
tcgatcctgatctcggaaaaggtcgtggccgatgaccgctacacctcggtgcacatcgag
gaactgacggtcgtcgcccgtgacaccaagctcggaccggaagaaatcacgcgcgacatc
agcaacctggccgaaacccagctgaaccgcctggacgattcgggcatctgctacatcggc
gccgaagtcagcgccgacgacgtgctggtcggcaaggtcacgcccaagggcgagacccag
ctgacgccggaagaaaagctgctgcgcgccatcttcggtgaaaaggcgtccgacgttaag
gacacctcgctgcgcgtgccctcgggcatgaccggcaccgtcatcgacgtgcaggtgttc
acccgcgaaggcatcgtgcgcgacaagcgcgcccagtccatcatcgacgatgaactgcgc
cgctaccgccaggacctgaacgaccagctgcgcatcgtcgagaacgaccagttcgaccgt
atcgagaagctgctggtcggcaagaccgtcaacggcggcccgcgcaagctggccaagggc
gccacgatcaccaaggcctacctggctgatctggaccgctggcagtggttcgacatccgc
ctggccgacgagccgcacgccgtcgtgctggagcaggccaaggaatcgctggagcagaag
cgccaccagttcgacctggctttcgaagaaaagcgcaagaagctgacgcaaggcgacgag
ctgcccccgggcgtgctcaagatgatcaaggtctacctggccgtgaagcgccgcctgcag
cctggcgacaagatggccggccgtcacggcaacaagggcgtggtctcgcgcatcaccccg
gtcgaggacatgccgcacatggctgacggcacccccgccgacatcgttctgaacccgctg
ggcgtgccctcgcggatgaacgtgggccaggtgctggaagtgcacttgggctgggccgcc
aagggcgtgggccatcgcatcgccgacatgctgcgcgacgagcgcaccgcgcaggtcaag
aacgtccgcgcctacctggacaaggtctacaacacgaccggttcgggcgcgcgcatcgac
gagctgaccgacgacgaagtcatggaaatggcgcagaacctcaagaacggcgtgccgttc
gcgacgcccgtgttcgacggcgcgaccgaagaggaaatcacgacgatgctcgagctggcc
tatccggacgacgtcgccaagcgcatgcagctgaccccgtcgcgcacgcaggcctggctg
ttcgacggccgcaccggcgagaaattcgagcgcccggtgaccgtcggctacatgcactac
ctgaagctgcaccacttggtcgacgacaaaatgcacgcgcgttccacgggtccgtactcg
ctggtcacgcagcagcctctgggcggcaaggcgcagttcggcggccagcgtttcggggaa
atggaagtgtgggcgctggaagcgtacggcgcgtcctacaccctgcaggaaatgctgacg
gtgaagtccgacgacatcaccggccgcaccaaggtatacgaaaacatcgtcaagggcgat
cacgtcatcgacgccggcatgccggaatcgttcaacgtgctggtcaaggaaatccgctcg
ttggccctggacatggatttggagcgtaactaa
DBGET
integrated database retrieval system
