Achromobacter sp. AONIH1: C2U31_09870
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Entry
C2U31_09870 CDS
T05288
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
achr
Achromobacter sp. AONIH1
Pathway
achr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
achr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2U31_09870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
achr03019
]
C2U31_09870
Enzymes [BR:
achr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C2U31_09870
Messenger RNA biogenesis [BR:
achr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C2U31_09870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
LBP_BPI_CETP_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUT46266
LinkDB
All DBs
Position
2175603..2177063
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AA seq
486 aa
AA seq
DB search
MTDSTQSVAPAAEAPAPSFADFGLHPLLLQSIAETGYTKPTPIQAQAIPVVVEGRDVMGA
AQTGTGKTAAFTVPILHRLMPLANASASPARHPVRALILTPTRELADQVYESVKRYSKQT
PLRSAVVFGGVDIGPQREALRRGCEILVATPGRLLDHVEQKNVNLGQVGILVLDEADRML
DMGFLPDLERIIRLLPAQRQGLLFSATFSNEIRKLGRSYLNQPVEIEVAARNATANTITQ
IAYKMSGDNKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQA
DRMKALEAFKAGDLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGAS
GEAIALFTAEEERFLLDIEKLIKREVPRGTLDVPADLIARSHGRGEERGSPREGREGRDR
GDRGRSSERGSERRSSYSAPRQPVDDFFLKPYEPSAAGPAPEKDAPVKSNGAKRQVAVLL
GGSRKP
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgactgactccactcaatccgtagcacccgccgccgaggcccccgcgccttcgtttgcc
gatttcggcctgcatcccctgctgctgcagtccatcgccgaaaccggctacaccaagccc
acgccgatccaggcgcaagcgattccggtcgtggtcgaggggcgcgacgtcatgggcgcc
gctcaaaccggcaccggcaagaccgccgcgttcaccgtgcccatcctgcaccgcctgatg
ccgctggccaacgccagcgcttcgcccgcgcggcacccggtgcgcgcgctgatcctcacg
cccacgcgcgaactggcggaccaggtgtacgaaagcgtcaagcgctacagcaagcagacg
ccgctgcgttcggccgtggtgttcggcggcgtggacatcggtccgcagcgcgaagcgctg
cgccgtggctgcgaaatcctggtcgccacgccgggccgcctgctggatcacgtggaacag
aagaacgtgaacctgggtcaggtcggcatcctggtgctggacgaggccgatcgcatgctg
gacatgggcttcctgcccgacctggagcgcatcatccgcctgctgcccgcgcagcgccag
ggcctgctgttctcggccaccttcagcaacgaaatccgcaagctgggccgctcgtacctg
aaccagccggtcgagatcgaggtcgccgcccgcaacgccaccgccaacaccatcacgcag
atcgcctacaagatgtcgggcgacaacaagcgcgcggccgtggtgcacctggtgaagtcg
cgcggcctgaagcaggtcatcgtgttctccaacaccaagatcggcaccgcccgcctggcc
cgccagctcgaacgcgatggtgtgaaggccgaatccatccacggcgacaagacccaggct
gaccgcatgaaggcgctggaagccttcaaggccggcgatctggaagtgctggtggccacc
gacgtggccgcgcgcggcctggacgtggccggcgtgccttgcgtcatcaactacgacctg
ccgtacaacgccgaagactacgtgcaccgtatcggccgtaccggccgcgcgggcgcgtcg
ggcgaagccatcgcgctgttcacggcggaagaagagcgcttcctgctcgacatcgagaag
ctgatcaagcgcgaagtgccgcgcggtacgctggacgtgcccgccgacctgatcgcccgc
agccatggccgtggcgaggagcgcggctcgccgcgcgagggtcgcgaaggacgcgatcgt
ggcgatcgcggccgttcgtccgagcgtggatccgagcgccgctcgtcgtattccgcgccg
cgccagcccgtggacgatttcttcctcaagccctacgagccgtcggccgccgggcccgcc
cccgaaaaggacgcgccagtcaagtcgaacggcgccaagcgccaggtcgccgtgctgctc
ggcggcagccgcaagccctga
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