Achromobacter sp. AONIH1: C2U31_15445
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Entry
C2U31_15445 CDS
T05288
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
achr
Achromobacter sp. AONIH1
Pathway
achr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
achr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2U31_15445 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
achr03019
]
C2U31_15445 (rnr)
03016 Transfer RNA biogenesis [BR:
achr03016
]
C2U31_15445 (rnr)
Enzymes [BR:
achr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C2U31_15445 (rnr)
Messenger RNA biogenesis [BR:
achr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C2U31_15445 (rnr)
Transfer RNA biogenesis [BR:
achr03016
]
Prokaryotic type
tRNA degradation factors
C2U31_15445 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
HVO_A0261_N
HTH_20
OB_Dis3
Rrp44_S1
HTH_IclR
DUF5818
Motif
Other DBs
NCBI-ProteinID:
AUT47263
LinkDB
All DBs
Position
3360502..3362949
Genome browser
AA seq
815 aa
AA seq
DB search
MAKRSNNDSNNNRSTSLPEAPPDFDPDVPSREAILKALRGAGAPLSPAELAERMGVEREA
TMVGFERRLAAMERDGQLMPNRKGVLLLATKLDFVAGKVLGHRDGFGFLLRDDGGPDLFL
SPREMLKVLHGDRVLVKPGGEYRGKPEGTIVEVIERRTNKLVGRFLHEHGLSIVVPEDQR
IKHDILIPPSDTNGAQHGQVVSVEIMAQPTRHTQPLGRVSEVLGEIDDPGMEIEIAVRKF
DVPVEFSEAARKQAARLPDVVRKSDLKDRVDLRDVPLITIDGEDARDFDDAVYCEPVELG
TGQRKRPGWRLLVAIADVSHYVRPGDALDDDALERGTSVYFPRRVIPMLPESLSNGLCSL
NPEVDRLVLVCDMVIPASGAKAGTVTAYQFYNAVMYSHARTTYTNIWAALQQPGGPAAHA
MRSVMPQVQHLYELYQLLAQGRKKRGAIDFDTVETKIVCNELGRIEQIAPSVRNDAHKLI
EECMLAANTCAADFMTRSKHPGLYRIHEGPTPERLQSLREFLRTMGLSTLGGGETPTAKD
YGDFLDSVRGRPDYQLLQTMCLRSMQQAIYSPDNLGHFGLAYPGYSHFTSPIRRYPDLLT
HRVIKALLAGQRYVPSLDDHAVVIGRTQREHEHAIWEKLGLMLSACERRADEASRDVEAW
LKCWFVKERVGEDFSGTVTGVASFGIFVTLDTLHVEGLVHVSELGGEYFQFNDALHELRG
ERTGMRYRLTDKVQVQVSRVDLEARRIEFRLVQGTSFDALRKAAARGPDDGSRRVKKAAA
PKPAALKGQTAKVRRAEAKKAGRPAKHAAAKKPKR
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaaacgatcgaataacgactcgaataacaatagatcaacctccttgcccgaagcg
cctcccgacttcgatcctgatgttccgtctcgcgaagccatattgaaggcgttgcgcggc
gcgggggcgcccttgtcgccggccgagctggccgagcgcatgggcgtcgagcgcgaggcg
accatggtcggcttcgagcgccgcctcgccgccatggaacgcgacggccaactgatgccc
aaccgcaagggcgtgctgctgctggccaccaagctggacttcgtggcgggcaaggtgctg
ggccaccgcgacggtttcggcttcctgctgcgcgacgacggcggcccggacctgttcctg
tcgccgcgcgagatgctcaaggtgctgcatggcgaccgcgtgctggtcaagccgggcggc
gagtatcgcggcaagcccgaaggcaccatcgtcgaggtcatcgagcgccgcaccaacaag
ctggtcggccgtttcctgcatgagcatggcctgtccatcgtggtgccggaagaccagcgc
atcaagcacgacatcctgatcccgcccagcgacaccaacggcgcccagcacgggcaggtg
gtgtcggtcgagatcatggcgcagcccacccgccacacgcagccgctgggccgcgtgtcc
gaggtgctgggcgagatcgacgatcccggcatggagatcgagatcgcggtgcgcaagttc
gacgtgccggtggaattctccgaagccgcccgcaagcaggccgcgcgcctgcccgacgtg
gttcgcaagagcgacctgaaagaccgcgtcgacctgcgcgacgtgccgctgatcaccatc
gacggcgaggacgcccgcgacttcgacgacgccgtctactgtgagccggttgaactgggc
acgggccagcgcaagcgcccgggctggcgcctgctggtggcgatcgccgacgtcagccac
tacgtgcggcccggcgacgcgctggacgatgacgcgctcgagcgcggcaccagcgtctat
ttcccgcgccgggtcatcccgatgctgccggaatcgctgtccaacggcctgtgctcgctg
aaccccgaggtggaccgcctggtgctggtctgcgacatggtcatcccggccagcggcgcc
aaggccggcacggtcaccgcctaccagttctacaacgcggtcatgtactcgcatgcccgc
accacctacaccaacatctgggccgcgctgcaacagcccggcgggccggccgcgcatgcc
atgcgctcggtcatgccgcaggtgcagcacctgtacgagctttaccagctgctggcgcag
ggccgcaagaaacgcggcgccatcgatttcgacacggtcgagaccaagatcgtctgcaac
gagctgggccgcattgagcagatcgcgccgtcggtgcgcaacgacgcgcacaagctgatc
gaagagtgcatgctggccgccaacacctgcgcggccgacttcatgacgcgcagcaagcat
cccggcctgtaccgcatccacgaaggcccgacgccggaacgtctgcagtcgctgcgcgag
ttcctgcgcaccatgggcctgtcgacgctgggcgggggcgaaacgcccacggccaaggac
tacggcgacttcctggatagcgtgcgcggccgtcccgattaccagctgctgcagaccatg
tgcctgcgctccatgcagcaggccatctacagcccggacaatctcggccacttcggcctg
gcctatcccggctacagccacttcacgtcgccgatccgccgctatcccgacctgctgacg
catcgcgtcatcaaggcgctgctggccggccagcgctatgtgcccagcctggacgaccac
gcggtggtcatcggccgcacccagcgcgagcacgagcacgccatctgggaaaaactgggc
ctgatgctgtcggcctgcgagcggcgcgccgacgaagcctcgcgcgacgtcgaggcctgg
ctcaagtgctggttcgtcaaggagcgcgtgggcgaggacttcagcggcacggtcacgggc
gtggccagcttcggcatcttcgtcacgctggatacgctgcacgtcgaagggctggtgcat
gtgtcggaactgggcggcgagtacttccagttcaacgatgcgctgcacgagctgcgcggc
gaacgcaccggcatgcgctaccgcctgaccgacaaggtgcaggtgcaggtgtcgcgcgtg
gacctggaagcgcgccgcatcgagttccgcctggtccagggcaccagcttcgacgccttg
cgcaaggcggcggcgcgcggtccggacgacggctcgcgccgcgtcaagaaggcggcggcg
cccaagccggcggccctgaagggccagaccgccaaggtgcgccgcgccgaggccaagaag
gccggccggcccgccaagcacgcggcggcgaaaaagccaaagaggtag
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