Achromobacter sp. AONIH1: C2U31_22830
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Entry
C2U31_22830 CDS
T05288
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
achr
Achromobacter sp. AONIH1
Brite
KEGG Orthology (KO) [BR:
achr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C2U31_22830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
achr03400
]
C2U31_22830
Enzymes [BR:
achr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C2U31_22830
DNA repair and recombination proteins [BR:
achr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C2U31_22830
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AUT48581
UniProt:
A0A2I8DNC7
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All DBs
Position
complement(4963718..4964881)
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AA seq
387 aa
AA seq
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MASPRRRAGCTDARCRWMSCCAACPKACGRRRARRNPSRGKCPPARRGATCYLFAALMFL
TAVRRRPGSSARHGKGGRMPGERGRQTRREDGKPHAGGPGRLTHAERVIDPASGLTKGDL
ARYYTQAAPLMRPYLKGRPVSLVRAPSGIGGDLFFQRHMDAAMPGARLLPESLYPGHPPL
LELPTPRAVLAAVQMNAIEFHTWNAVKTAIDKPDRIVFDLDPGEGVPWENVRQAARVLRA
LLSEIGLDAWLKTSGGKGLHVLVPLRRQHGWETTKDFSAALVRHLAQAWPQLFVAKSGPR
NRVGRIYADYLRNGFGATTVAPWSARARPGLPISVPISWDELEQVRGGAHWTIADARERL
DIGNRPWDGYAPQALGKAMAALGSRPS
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgccaaggcgcagggctggctgtacggacgcgcggtgccgctggatgagctgc
tgcgccgcttgcccgaaggcttgcggccgccgccgcgcgcgccgcaacccatcgcgcggg
aagtgcccgccagctaggcgcggggcgacgtgttatctgtttgccgcgctcatgttcctg
acggcggttcggcgccgccctggatcgagcgcgcgccatggaaagggaggccgaatgccg
ggcgagcgagggcgacaaacacgacgggaagacggcaagccccatgccggcgggccgggc
cggctgacgcacgcggagcgcgtcatcgatcccgcgagcggcctgaccaagggcgatctc
gcgcgctactacacgcaggctgctccgttgatgaggccctatctgaaggggcggccggtc
tcgctggtgcgcgcgccgtcgggcatcgggggggacctgtttttccagcgccacatggat
gccgcgatgcccggtgcgcgtctgttgccggagtccctgtatccggggcatccgcccttg
ctggagctgccgacgccgagggcggtgctggcggcggtccagatgaatgccatcgaattc
cacacctggaacgccgtgaagacggccatcgacaagccggaccgcatcgtgttcgacctg
gacccgggcgagggcgtgccctgggagaacgtcaggcaggcggcccgggtgctgcgcgcg
ttgttgagcgagatcgggctggacgcgtggctcaagaccagcggcggcaagggcctgcat
gtgctggtgccgctgcgcaggcagcatggctgggaaaccacgaaggatttttcagcggcc
ctggtgcggcatctggcgcaggcctggccgcagttgttcgtggccaagagcggtccgcgc
aaccgggtgggcaggatctacgcggactacctgcgcaacggctttggcgcgacgaccgtg
gcgccctggtcggcgcgggcgcggccgggcctgccgatctcggtgccgatcagctgggac
gaactggagcaggtgcgcggcggcgcgcactggaccatcgcggacgcgcgggagcgattg
gatatcggcaatcgtccctgggatgggtatgcgccgcaggccttgggcaaggccatggcg
gcgcttggttcgcgtccgtcgtga
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