Acinetobacter chenhuanii: ABLB96_04105
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Entry
ABLB96_04105 CDS
T11543
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
achu Acinetobacter chenhuanii
Pathway
achu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
achu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABLB96_04105 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
achu03021
]
ABLB96_04105 (rpoC)
03400 DNA repair and recombination proteins [BR:
achu03400
]
ABLB96_04105 (rpoC)
Enzymes [BR:
achu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABLB96_04105 (rpoC)
Transcription machinery [BR:
achu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABLB96_04105 (rpoC)
DNA repair and recombination proteins [BR:
achu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABLB96_04105 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
XDO76663
LinkDB
All DBs
Position
841057..845250
Genome browser
AA seq
1397 aa
AA seq
DB search
MKDLLDIMRKKTDSDGHAPVEFDRIRIGLASPEMIKSWSHGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECLCGKYKRMKYKGVICEKCGVEVTTAKVRRERMGHIELASPVAHIW
FLKSLPSRIGLLLDMTLRDIERVLYFESYVVTDPGMTPFEKYQLLNDEEYFTALEEHGDE
FVAKMGAEAVQDLLKDIDLEAEISRLREEIPQTTSETKLKKASKRLKLMEAFKDSNNKPE
WMVMNVLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE
KRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI
TVGPTLRLHQCGLPKKMALELFKPFIFAKLQASGQATTIKAAKKMVERETPEVWDVLASV
IRQHPVMLNRAPTLHRLGLQAFEPILIEGKAIRLHPLVCAAFNADFDGDQMAVHVPLTLE
AQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYITRDAVNAKGEGMVFADTHEVNR
ALATGQVAIHARVKVRVHQTVINENGEREHQTIIVDTTPGRCLLWEVVPQGLSFDMINLE
MTKKNISKLINSCYRKLGLKDTVIFADQLMYLGFRQATRSGVSVGMEDMLIPPTKHTIID
KAETEVREIEQQFEQGFVTAGERYNKVVDIWARTNDQVAKAMMDNLSYTVVKNKQGEDEK
QKSFNSIYMMSDSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIKANFREGLTVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVAQDLVITEPDCGTAGGLVMTPFIQGGDVIEPL
RDRVLGRVTAEDVRRASDDEVVLPRGTLIDEKIAAQLEEAGVDEVKVRSVIACESTFGVC
ARCYGRDLARGHLVNPGESVGVMAAQSIGEPGTQLTMRTFHVGGAASRTSAANSVQVRNK
GTVRFHNVKTVQHAKGHLVSVSRSGEIGIADELGRERERYKLPYGASILLKDGEIVEAGG
IVATWDPHTHPLVTEVAGKARFSQIADGVTATSKTDDATGMTTVEILPVTARPASGKDLR
PAIVLDMADGGEQFYFLPQNTIVTVRDGETIGVGDVIGRVPQETSRTRDITGGLPRVADL
FEARKPKEHAILAEVSGIVSFGKETKGKNRLVITPDDGSEIYEELIPKWRQINVFEGEHV
NRGETISDGPQNPHDILRLKGEVALTNYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKV
DITDGGDTSFIKGEQVDYIRVVQENQAVLAQNKFPAKFERQLMGITKASLSTDSFISAAS
FQETTRVLTEAAVTGKEDDLRGLKENVVVGRLIPAGTGLAYHLERRRQEAEAAEHELHND
FSEVDQAFSQALNSEQF
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctcgatatcatgcgtaagaaaacggactcagatggtcatgcaccagtt
gagttcgaccgtatccgtattggtcttgcgtcaccagaaatgattaagtcatggtctcat
ggtgaagttaaaaagcctgagacaattaactatcgtacatttaaaccagaacgtgatggt
ttgttctgtgccaaaatctttggtccagtaaaagattacgaatgcttgtgtggtaaatac
aagcgtatgaaatacaaaggcgtcatttgtgaaaaatgtggcgttgaagtaactacagct
aaagttcgtcgtgaacgtatgggtcacattgaacttgcttcaccagttgcgcatatctgg
ttcttaaaatcgttacctagccgtatcggtttattacttgatatgacacttcgtgatatc
gaacgcgtattgtatttcgaatcatacgttgttactgatcctggcatgactccatttgaa
aagtatcaacttcttaatgatgaagaatactttactgctttagaagagcacggtgatgag
ttcgttgcgaaaatgggtgcggaagctgttcaagacttgttaaaagacattgatcttgaa
gctgaaatttcacgtttacgtgaagaaatccctcaaacaacttctgaaacgaagttgaaa
aaagcgtctaaacgcttgaaattgatggaagcattcaaagattcgaacaacaagccagaa
tggatggtaatgaatgtacttccagtacttccaccagatttacgtccattagttccactt
gaaggtggtcgttttgctacttctgacttgaacgatttatatcgtcgagtgattaaccgt
aacaaccgtttgaagcgtcttcttgaccttgcagcaccagacattatcgtacgtaacgaa
aaacgtatgttacaagagtctgtagatgcattgcttgataacggtcgtcgtggtcgtgca
atcactggttctaacaaacgtccattaaaatctttggcagatatgatcaaaggtaaacaa
ggtcgtttccgtcagaacttgttaggtaagcgtgttgactactctggtcgttcggtaatt
actgtaggtcctactttacgtcttcaccaatgtggtcttccgaagaaaatggcacttgaa
ttattcaaaccatttattttcgcgaaactacaagcttcaggtcaggcaacaaccattaaa
gctgcgaagaaaatggttgagcgcgagactccggaagtttgggacgttcttgcatctgta
attcgtcaacatccagtcatgttgaaccgtgcgccaacacttcaccgtttaggtcttcaa
gcatttgaacctattcttattgaaggtaaggcaatccgtcttcacccactcgtttgtgct
gcgttcaacgccgacttcgacggtgaccaaatggcggtacacgttccattgacacttgaa
gcacagttagaagctcgtgcattgatgatgtcaacgaacaacatcttgtcaccagcaaac
ggtgagccaatcatcgttccttctcaagacgttgtcttgggtctttactacatcactcgt
gatgcagtaaatgctaaaggtgaaggtatggtgtttgctgatactcacgaagtaaaccgt
gcacttgcaactggtcaagttgcgattcatgcgcgtgttaaagtacgtgtgcatcaaact
gttatcaatgaaaatggtgaacgtgaacaccaaactattattgttgatacaacaccaggt
cgttgcttactttgggaagttgttccacaaggtttaagttttgacatgatcaaccttgag
atgactaaaaagaacatctctaagttaatcaactcttgctaccgtaaacttggtttgaaa
gatactgttatcttcgctgaccagttaatgtacttgggcttccgtcaagcgactcgttca
ggtgtatctgtaggtatggaagacatgttaattccacctactaagcacacaattattgat
aaagcggaaacagaagttcgtgaaatcgaacaacagttcgaacaaggtttcgtaactgct
ggtgaacgttataacaaagttgtcgatatctgggcgcgtacaaacgaccaagttgcgaaa
gcgatgatggataacttgtcttacactgttgttaaaaacaaacaaggtgaagacgagaag
caaaaatcattcaacagcatttatatgatgtctgactctggtgcccgtggtagtgcggcg
cagattcgtcagcttgctggtatgcgtggtttgatggcaaaaccggatggctcgattatt
gagactccaattaaagcgaacttccgtgaaggtttaacagtacttcagtactttatttcg
acacacggtgcgcgtaaaggtttggccgatacagcattaaaaactgcgaactctggttac
ttgactcgtcgtcttgtagacgtagcgcaagatttagtaattactgagcctgactgtggt
acagcgggtggtttggtgatgactccattcattcaaggtggtgatgtcatcgagccatta
cgtgaccgcgtattaggtcgtgtaactgctgaagatgtacgtcgtgcatctgatgatgaa
gttgtattacctcgtggtacgttaattgacgagaaaatcgcagctcagcttgaagaagca
ggtgtcgatgaagttaaagtacgttctgtaatcgcatgtgaatctacattcggtgtatgt
gctcgttgttatggtcgtgaccttgcacgtggtcacttggtgaacccaggtgaatcagta
ggtgtaatggctgcacaatcaattggtgagccaggtacacagttaacaatgcgtacgttc
cacgttggtggtgctgcaagccgaacttctgctgcgaacagtgttcaagtacgtaacaaa
ggtactgtacgtttccacaacgtgaaaactgtacaacatgcgaaaggccatttggtttca
gtttcacgttcaggtgaaattggtattgccgatgagttaggtcgtgagcgtgagcgttat
aaacttccttacggtgcaagcatcttgttgaaagatggtgaaatcgttgaggcaggtggc
atcgtagcgacttgggatccgcatacacatccattagtaacagaagttgctggtaaagcg
cgtttcagccaaattgctgatggcgtaactgcaacatcgaaaactgatgatgcaactggt
atgacaactgttgaaatcttgcctgtaacagcacgtcctgcttctggtaaagatttacgt
ccagcaatcgtattagatatggctgatggcggcgaacagttctacttcttgccacaaaac
acaatcgtaactgtccgtgatggcgaaacgattggtgtgggtgacgttattggtcgtgta
ccacaagaaacatcacgtactcgtgatattaccggtggtcttccgcgtgttgctgacttg
ttcgaagcgcgtaaaccgaaagaacatgcgatcttggcagaagtgtctggtatcgtaagc
ttcggtaaagagactaaaggtaagaaccgtttagtgattacaccagatgacggttcagaa
atttacgaagaattgattccaaaatggcgtcaaatcaacgtgtttgaaggtgagcatgtg
aaccgtggtgaaaccatttctgatggtccacaaaacccacatgacatcttacgcttgaaa
ggtgaagttgctttaactaactacatcgtgaacgaagttcaagacgtttaccgtctccaa
ggtgtaaaaatcaacgataagcacattgaagttatcgtacgtcaaatgttgcgtaaagtt
gatatcactgatggtggcgatacaagctttatcaaaggtgaacaagtggattacatccgc
gttgttcaagagaaccaagctgtcttggctcagaacaagttcccagcgaagtttgaacgt
caattgatgggtattacgaaagcatcgctttctactgattcgttcatctctgctgcatcg
ttccaggaaacaactcgtgtgttaactgaagcggctgtaacaggtaaagaagatgactta
cgtggcttgaaagaaaacgttgtagtgggtcgcttgattccagctggtactggtcttgca
taccacttagagcgtcgtcgtcaagaagcggaagcagcagaacacgagcttcacaatgac
ttcagcgaagtagaccaagcatttagccaagctttaaactcagaacaattctaa
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