Acinetobacter chenhuanii: ABLB96_04710
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Entry
ABLB96_04710 CDS
T11543
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
achu Acinetobacter chenhuanii
Pathway
achu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
achu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABLB96_04710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
achu03019
]
ABLB96_04710
03009 Ribosome biogenesis [BR:
achu03009
]
ABLB96_04710
Enzymes [BR:
achu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ABLB96_04710
Messenger RNA biogenesis [BR:
achu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABLB96_04710
Ribosome biogenesis [BR:
achu03009
]
Prokaryotic type
rRNA processing factors
ABLB96_04710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
XDO76773
LinkDB
All DBs
Position
complement(970134..973487)
Genome browser
AA seq
1117 aa
AA seq
DB search
MKRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY
GAGRQGFLSMREIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISL
AGRYLVLMPNNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQL
DLQHLLDLWTQIQSTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYN
FVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSID
INSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKL
REATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSI
MRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHY
EIAYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHAAAPASNNAPAQKKA
SHANQPVAQQPSAQKSASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMINTGAVSRG
QFGQVVAPAVAEVAPVQTNNAYISQSPVKQEVREHVEKDDKSQQQRQNNKKRKHKEQREQ
HHQPHEQQQHQHQVHEEVVQLSRQEQRELKRQQKRQQQQDQQHQNNDVQQPENAVPRRDR
NNQQRPNRPNRHRDPSVLNENQNTPAPVVVDEKQIKVDVIDAPKHDVMNTALIINVDQGQ
SEIVALTGEKQVERVEAAPAEVAQEPTPAPVVEEKAVAAEVKEVVQPTEEATQPQQIQRA
SNDPRMRRRQQRGAKQAKAAAPSVTPSQIPTLAQYTIGSLIRHVYGEDCTVLIEQFGLVP
TFNRALQKFAEQYASTLVVEVTSETEEKKPVTRDAELPSRKPAEEAEPAPVLPLTPSQAP
TPRVANDPRERRRLAKLAAEQAFEQVKQQHSAPAEEVTPAAPVAEETVAEPTETQAPVAP
EQQPLELNQSTEATQPEASPEPVEEKTTETVAQAPVAKAPAPSKAANKAKAAVEDTAAPV
EATAEAESEDAKADKDKPSRPRRPRGRPPKKANPVAE
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgattaatgcaactcacgccgaagaagttcgcgttgcacttatcact
ggtaatcgtctttacgattttgatttagaaaatcgtacccgagaacagaaaaaatccaat
atctataaaggccatgtcacccgcgtagaaccttctttagaagctgtttttgttgaatac
ggcgcaggtcgtcaaggcttcttgtctatgcgtgaaattgcgaatagctatttccaagca
gacccacgtcagacttcaaacattcgtgaacttatcactgaaggtactgagcttttagtt
caggttgaaaaagaagagcgtggcaataaaggtgcagcactctctacttttatttctctt
gcaggtcgctatttagttctcatgccaaacaacccgaaaggtggtggtattagccgtcaa
atttcaggttcagtacgtgaagagttaaaagaaattttagcgtctttaaatgtacctcgc
ggcatgagcgtgattgtacgtaccgctggtattggccgcacgcaagaagaattacagctc
gatttacaacacttgcttgacctttggacacaaattcaaagtacagcaagctcaggtcct
tctccgatgcttgttcatcaagaagctggcgttgtaacacgtgcgattcgtgattactta
cgtgatgacgttgcggaaatcttaattgatagcgaacaggcttataacgaagcatataac
tttgttaaagcagtcatgccacgtcaattagacaaattaaaaacttatactttaaacgag
ccgttgtttgctcattttggtattgagagccaaattcaaactgcttatgagcgtgaagta
aaacttccttctggtggttcaatcgtaattgaccagactgaagctttagtttcaatcgac
atcaactctgcgaaatcaactcgcggacatgatgttgaagaaactgcgcttaataccaac
ttagaagcagcagaagaaattgctcgccaacttcgtcttcgtgacattggtggtctagtt
gtaatcgacttcatcgatatgactaaagaacgcaaccaacgtatggttgaagcaaaactt
cgtgaagcaacacaaagcgatcgtgcccgtatccagttcggtcaattgtctcgttttggt
ttaatggaaatgagccgtcagcgcttacgtccatcgcttgaagaagcaacaggttatgtg
tgccctcgctgtcatggtacaggtatggttcgcgacctacgttcgctttctctttcaatc
atgcgtaaagtggaagaaattgcacttcgtgaacgtcatggtgaagttcaagttgaggtt
cctgttgaaattgcagcattcttgctcaatgaaaaacgccatagtctggtgtatttagaa
cagacttctggtgtacgtgtgactgtattacctcatccacacttagaaactccacattac
gaaatcgcttataacccagatggctttgcaccatctagctatgaacgtactgaagcaact
cgttctagtgaaaaagagttaggttatgagtcttctgaatggcatttagaagaagcagat
catgggcatgcacatgcagcagctccagcttcaaataatgcccctgctcagaaaaaagca
agccatgcaaatcaaccagtagcacaacagccttctgctcaaaaatcggcaagcccttgt
gcatggttagaaaatttatttgttcaaaaacaagcgcaaacagttgatcaatctcgttca
gcacaaaatgcagctgctgcaattgagcaaatgatcaataccggcgcagtaagtcgtggt
cagtttggacaagttgtagcgccagcagttgctgaagttgcaccagttcaaacaaacaat
gcttacatttcacaatcacctgtgaaacaagaagttcgtgaacatgttgaaaaagatgat
aaatctcaacaacaacgtcagaacaacaaaaagcgtaagcataaagagcaacgtgaacaa
catcaccaaccacatgaacaacaacagcatcagcaccaagttcatgaagaagtggttcaa
ttgtcacgccaagagcaacgtgagttaaaacgtcagcaaaaacgtcaacaacagcaagat
cagcaacatcaaaataatgatgtacaacaacctgaaaacgctgtgccacgtcgtgatcgt
aacaatcaacaacgtccaaaccgtccaaatcgccaccgcgatccaagcgtattaaatgaa
aatcaaaatacgccggcaccagttgttgttgatgagaaacaaattaaagttgatgtgatc
gatgcacctaagcatgacgtcatgaacacagctttaattatcaatgttgatcaaggacaa
agcgaaattgttgcgctaacaggtgaaaagcaagttgaacgtgttgaagctgcacctgct
gaagtcgctcaagagccaactcctgcacctgttgtagaagagaaagctgttgctgctgaa
gttaaagaagttgttcagccaactgaagaggctactcagccacaacaaatccaacgtgct
agcaatgaccctcgtatgcgtcgtcgccagcaacgtggggctaaacaagctaaagctgcg
gctccttctgttacgccatcgcaaattccgactttggcacaatacacgattggtagcttg
attcgtcacgtttatggcgaagactgcacggtactaattgaacaatttggtttagtacca
acgtttaatcgtgcattgcagaagtttgcagagcagtacgctagtactttggtggttgaa
gtaacttctgaaacagaagagaaaaaaccggtaactcgtgatgcagaacttccaagccgt
aaaccagctgaagaagcagaaccagcacccgtacttccacttactccatcgcaagctcca
actccacgtgttgcaaatgatccgcgtgagcgccgtcgtttggcaaaactagctgcggaa
caagcttttgagcaagtgaaacaacaacattctgctcctgcggaagaagttactcctgct
gctcctgtagctgaagaaactgttgctgagcctactgaaactcaagctcctgttgcacca
gaacagcaaccgcttgaacttaatcagtcaactgaagcaacacaacctgaagcgtctcca
gaacctgtagaagaaaaaactacagaaactgtagctcaagctcctgtagcaaaggcacct
gctccatcaaaagctgcaaataaagcaaaagcagcagttgaagatacagcagcaccggtt
gaagcaaccgctgaggccgagtcagaagacgcaaaagctgacaaggataaaccgagtcgc
cctcgtcgccctcgtggtcgtccacctaaaaaagccaatcctgtagctgagtaa
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