Acinetobacter baylyi: ACIAD0438
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Entry
ACIAD0438 CDS
T00185
Symbol
rne
Name
(GenBank) ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aci
Acinetobacter baylyi
Pathway
aci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACIAD0438 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aci03019
]
ACIAD0438 (rne)
03009 Ribosome biogenesis [BR:
aci03009
]
ACIAD0438 (rne)
Enzymes [BR:
aci01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACIAD0438 (rne)
Messenger RNA biogenesis [BR:
aci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACIAD0438 (rne)
Ribosome biogenesis [BR:
aci03009
]
Prokaryotic type
rRNA processing factors
ACIAD0438 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
HUA1_small
Motif
Other DBs
NCBI-ProteinID:
CAG67378
UniProt:
Q6FEY0
LinkDB
All DBs
Position
complement(436009..439425)
Genome browser
AA seq
1138 aa
AA seq
DB search
MKRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY
GAQRQGFLSMREIASSYLHADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISL
AGRYLVLMPNNPKGGGISRQISGSVREELKEMLASLNVPRGMSVIVRTAGIGRSQEELQL
DLQHLLDLWSQIQSTSNSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYN
FVKAVMPRQLDKLKTYTLNEPLFAHFAIESQIQTAYEREVKLPSGGSIVIDQTEALVSID
INSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKL
REATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSI
MRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHY
EIQYNPEGFAPSSYERTEATRSSEKELGYESSGWHLEDTEHQHASPVSQEASKAKNQQKP
ASPASAPAATPVKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNNGAVSRGQF
GQVAHVPAIAETAPVAVPSNNAYMSQNTTKHDAREQVEKDEKPQQQSRQNNKKRKHKEHR
EQHNHVQEQPQQVQIHEETVQLSRQEQREQKRHQKRHQSSPSEQHNEQQQTEEAVVPRRD
RNQQRPNRPNRYRDQSVLSEETAQTKAPANATAPVVDERQVRVDQIDVPRDEVLATALVI
NVDESQSEIVALTEQKETVKTAPVMKSEPVEAKTLPENKVKAATQVEPAVAETKSKQTES
TDSASTQVRRASNDPRMRRRQQREAQKAKAQTPKVLPSQVPQLAQYSIGSLIRHVYGEDC
TVLIEQFGLVPTFNRALLKFTEQYAATLVVSEVANATEDKKPVTRDVELPNSKPAEEVEP
APVLPLTPPQASVSRVANDPRERRRLAKQAAEQAHEQAKLAAEQAQIGSKEQPAADAVAT
SQVEEAPKSIETPVEAIALVEAVVDQPTATIVQEASTEEVAATSQIAVEAEQPQHDAVQA
SLPEIEQAETATTPQAKGKTSKATAKSAPKETSTEQEKIARPRRPRGRPPKKTSTGTE
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgattaatgcaacccacgctgaagaagtccgcgttgcacttatcact
ggtaatcgtctttacgattttgatttagaaaatcgtacccgcgaacaaaaaaaatcgaac
atctacaaaggtcatgtcacacgtgtagaaccgtctttggaagctgtatttgtcgaatac
ggtgcacagcgtcaaggtttcttatctatgcgtgaaattgcaagttcttacttgcatgcc
gacccacgtcagacctcaaatatccgtgaactgatcactgaaggtaccgagcttctggtt
caagttgaaaaagaagaacgcggcaacaaaggtgcagcgctttctacctttatctcgctt
gcaggacgctatcttgttctcatgccaaataatcctaaaggtggtggtattagccgtcaa
atttcgggttcagtgcgtgaagaactaaaagaaatgctggcctcactgaatgttcctcgt
ggcatgagcgtgattgtacgtactgcgggtattggtcgttcgcaagaagaattgcaactc
gatttacagcaccttctagatttgtggagccaaattcagagcacctcaaattctgggcca
tcacctatgctggttcatcaggaagcaggtgtagttactcgtgccatccgtgattacttg
cgtgatgacgttgctgagatcctaatcgatagcgaacaagcctataacgaagcctataac
tttgtaaaagcagtgatgccgcgtcagcttgataaactgaaaacttacacgctcaatgaa
ccactgtttgctcattttgctattgaaagtcaaattcagaccgcatacgaacgtgaagta
aaactaccttctggcggttcaatcgtgattgatcaaaccgaagcccttgtttcgatcgac
attaactcggccaaatcgactcgtggtcatgatgttgaagaaactgctcttaataccaac
ttagaagcagcagaagaaattgcccgtcaattgcgtttacgcgatattggtggcttggtc
gtcattgactttattgatatgactaaagaccgtaaccagcgtatggtcgaagccaaatta
cgtgaagcaacgcaaagtgaccgcgcgcgcattcaatttggtcagctctcacgctttggc
ttgatggaaatgagccgtcaacgtttgcgcccttctctagaagaagcgactggttatgtt
tgtccacgttgtcatggcacaggcatggtacgtgacctgcgttcactttcactttcaatc
atgcgtaaagttgaagagattgcattacgtgaacgtcatggtgaagttcaagttgaagta
cctgtagaaattgcagcatttttgcttaacgaaaaacgtcatagtttggtttatcttgaa
caaacttcgggtgtacgtgtcactgtcttgcctcacccacaccttgaaacaccgcattac
gaaatccagtacaatcctgaaggttttgcaccatcaagttatgaacgtactgaagcaacg
cgttcaagtgaaaaagaactgggttatgaatcatctggctggcatcttgaagatacagag
catcagcatgcaagtcctgtttcacaagaagcgtctaaagcgaaaaaccagcaaaaacct
gcatcaccagcatctgctcctgctgccacaccagtaaaagcggcaagcccatgtgcatgg
cttgaaaatctttttgtacaaaaacaagctcaaaccgttgatcaatcacgctcagcacaa
aatgcagctgctgcaattgagcaaatggttaacaatggtgccgtgagccgtggtcagttt
ggtcaggttgcacatgttcctgcgattgcagaaacagcaccagtggcagtgccatcaaac
aatgcctatatgtcacaaaacacgactaagcatgatgcacgcgaacaggttgagaaagac
gagaagccacagcaacaatcacgtcagaacaacaaaaagcgcaagcataaagagcatcgt
gaacagcacaatcatgtacaagagcagccacaacaggtacaaatacatgaagaaaccgtg
caactgtctcgtcaggaacagcgtgagcaaaaacgtcatcaaaaacgtcatcagtcatca
ccttctgaacaacacaatgaacagcagcagactgaagaagctgtagttccacgtcgtgac
cgtaatcaacaacgtccaaatcgcccaaatcgctatcgtgaccaaagcgtattgagcgaa
gaaacagctcaaaccaaagcaccagctaacgcaactgcacctgtagtagatgaacgccaa
gtccgtgttgatcagatcgatgtaccacgtgatgaagttttagctactgcattagtcatc
aatgtagatgaatctcaaagcgaaatcgtggcattgactgagcaaaaagagacggtaaaa
actgcaccagtaatgaagtctgaacctgttgaagctaaaactttaccagaaaataaagtt
aaagcagcaacccaggttgaacctgctgtagcagagaccaagtctaaacagactgaaagc
actgactctgcatcaacacaggttagacgtgcaagtaatgatccacgtatgcgtcgccgt
cagcaacgcgaggcacaaaaagcaaaagcgcaaacaccaaaagtgttaccgtcacaggtt
ccacagttagctcagtacagtattggcagtctaattcgtcatgtgtatggtgaagactgt
acggttctgattgaacagtttgggcttgttccaacgtttaaccgcgctttgctcaagttt
actgagcaatatgcagcaacgctggtggtgagtgaagttgccaacgctacggaagacaaa
aaaccagtcacccgtgatgtagagcttccaaacagcaaacctgctgaagaagttgagcca
gcacctgttttgccgcttacaccaccacaagcatcggttagccgtgttgccaacgatcca
cgtgaacgtcgtcgtttggcaaaacaggctgcagagcaggcccatgaacaagctaaactt
gcagcagaacaggcacagatcggttcaaaggaacagcctgctgctgatgccgttgcaacg
tctcaggttgaagaagcgcctaagagcatagaaacgcctgtagaagctatagctctagta
gaagcggttgtagatcaaccaacagctacgatagtgcaagaagcctctaccgaggaagta
gcagcaacttcgcaaatagcggttgaagctgagcagcctcagcacgatgcggtacaagcc
tcgttacctgaaatcgagcaagcagaaactgcaacgacgccgcaagctaaaggaaaaacc
agtaaagctacggcaaaatcggcacctaaagagaccagtacagagcaagaaaaaatcgct
cgtcctcgtcgtcctcgtggtcgtccaccgaagaaaacatcaactggcactgaatga
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integrated database retrieval system
