Acinetobacter baylyi: ACIAD1395
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Entry
ACIAD1395 CDS
T00185
Symbol
mfd
Name
(GenBank) transcription-repair coupling protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aci
Acinetobacter baylyi
Pathway
aci03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACIAD1395 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aci03400
]
ACIAD1395 (mfd)
Enzymes [BR:
aci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACIAD1395 (mfd)
DNA repair and recombination proteins [BR:
aci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACIAD1395 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CAG68261
UniProt:
Q6FCF0
LinkDB
All DBs
Position
1388642..1392157
Genome browser
AA seq
1171 aa
AA seq
DB search
MHVKIIDMSFIFYTSSMFQQQISELKLKQLKAGEKRWIGSLFGSSGALLFKEIVQQHTTL
LVIVTQNSQHLAQLESELEFYGVKPTIFPDWEILPYDRLSPHQDIVSERLAILSNMPQTG
VLLISASTLAQRVAPIGWVLGEHFDIQVGQKLDLEKEKLRLIQAGYHLVDTVYDHGEFAV
RGSIMDIYASGQEQPIRIDLFDDEIDTLKFFDPETQRTTENLKQFRILPAKEFPLKEGRS
IFRERYAEAFPTANPKKNPIYQDVLDGIASPGVEFYLPLFFEKGQMESQSYFTAYLPRNC
IVITNDALDESLTSCWKDVVQRYESRRHNIDQPILSPEHLFLMPNMVLEQLKQFPRIHVS
SEIIAERVGGINLPVSQPVKLAVDPKKEHPFEVVTKYINEVNHPVLLVAESAGRRESLKD
ALRPSLGDIPNVEGFDAFVKQQYAIAITNAPLDRGLVLSSQLAVISENQLYEHRVVQRRR
KRQQEVSEEFLIRSLTELSIGAPVVHIDYGVGRYAGLITLEIDDQDHEFLQLDYADAAKV
YVPVTNLHLISRYSGGDPDLAPLHKLGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKP
GFAFELDQSPYMQFSSGFAYEETLDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAM
RAAFLAVQNNKQVAVLVPTTLLAQQHYESFKDRFADWPIRIEVLSRFGSNKTHQKNIEDL
QTGKVDIVVGTHKLLQETVQFHDLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPI
PRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEHTDDSVREAILRELLRGGQVYFLHNEV
DSIERTAENIRNLVPEARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPN
ANTIIMERADKLGLAQLHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTL
GAGFMLATEDLEIRGAGELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLS
LTAEINLHMPALIPDEYLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGTLPVSVKQ
LFHVHQLRLQAEELGITKIDLNSQGGYIEFSQDTPVQAISIIQLMQKQPTYYRMEGGQRL
KVTVQLQEYDKRIQFAHALLSKLIQELHSYS
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
gtgcatgttaagataattgacatgtctttcatcttctatacaagctcaatgttccaacaa
caaatctcagaactcaaattaaagcagttaaaagcaggtgaaaaacgctggataggttca
ttatttggatcttctggtgcgcttctatttaaggaaatcgttcaacagcatacgacttta
ttggtaatcgttacacaaaatagtcaacatcttgctcaactcgaaagtgaactagaattt
tatggggtaaagcccacgatcttcccagactgggaaattctcccttatgatcgattgtcg
cctcatcaggatattgtttctgaacgtttagcgattctttcaaatatgcctcaaaccggc
gtgttgcttatttcggcgtctacactggcacagcgtgttgctcctataggttgggtgttg
ggtgagcattttgatattcaggttggacaaaagcttgatctagaaaaagaaaaattacgt
ttgattcaggcaggttatcatttggttgatactgtctatgaccatggagaatttgctgta
cgtggcagtattatggatatatatgcttcgggacaggaacaacctatccgtatagattta
tttgatgatgagatcgatacgctcaagttcttcgaccctgaaacgcagcgaacgactgaa
aatttaaagcagtttaggatattacctgccaaagaatttccgcttaaagaaggtcgctct
atatttcgagaacgatatgcagaagcctttcctactgcaaacccgaagaaaaatccaatt
tatcaagatgtactggatggaattgcctcaccaggtgttgagttttatttgcctttattt
tttgaaaaagggcagatggaaagtcaaagttattttacagcatacttacctagaaattgc
attgtcattacaaatgatgcgctagatgaaagtctaacttcttgttggaaggatgttgtt
cagcgttatgaaagtcgcagacataatattgaccagcccatattgtcgcctgagcatcta
tttttgatgccgaatatggtgttggagcagcttaaacaatttccacgtatacatgtatct
tcagaaattattgcagaacgtgtaggtggaattaatttaccagtatcacaacctgtaaag
ttggccgttgatcctaaaaaagaacacccttttgaagttgttacaaagtacattaatgag
gtcaatcatcctgttcttttggtcgcagaaagtgcaggacgtcgtgaaagcttaaaagat
gctttaaggccaagtttgggagacatcccaaatgtggaaggctttgatgcttttgtaaag
caacaatatgcgattgccattaccaatgcgccattggaccgaggtctggtgttgagcagc
cagcttgcggtgatttcagaaaaccagttatatgaacatcgagttgtacaacgccgtcgt
aagcgtcagcaagaagtctcagaagagtttctgattcgtagtttaacggaacttagtatt
ggtgcccctgttgtacatatcgattatggtgttggtcgctatgcagggctcattacactt
gagattgatgatcaggatcacgaatttttgcaattagactatgctgatgcggctaaagtt
tatgtgccagtcactaatttacacctaattagtcgttatagtggcggcgacccagatttg
gcaccattacataagcttggaacagatgcgtggagcaaagccaaaagaaaagcactggag
caaattcacgatgttgcagctgaattattgcatattcaggcacgccgtcagtcgaaacca
ggttttgcttttgagctcgatcaaagcccatatatgcaattttcaagtggttttgcttat
gaagagacacttgatcaagccaatgcaattgaagcgacattgcacgatatgcaacttgca
aaaccgatggatcgtctggtatgtggtgatgttggttttggtaaaacagaagttgcgatg
cgtgctgcatttttggcagtacagaataacaaacaagttgcagtattggttccaactacc
ttgctggcgcagcagcattacgagtcatttaaagaccgttttgcagactggcctattcgg
atagaagtactatcccgatttggttcaaataaaacccatcaaaaaaatattgaagatttg
cagacagggaaagtggatattgtggtaggaactcataaactgttacaggaaacagtacag
tttcatgatttgggattgatgatcgtggatgaagagcatcgttttggtgtacgcgataaa
gagcgaatcaaagccatgcgtgctgatgttgatatgctaaccttaactgcaacgccaatc
ccaagaacgttaaatatggcattctcaggtatgcgggatttatccattattgcaacgccg
ccagcacgtcgcctggcggttaaaacatttgtacaagagcatacagatgattcggtaaga
gaggcgattttgcgcgagctgttacgtggtggacaagtttatttcctgcataatgaagta
gatagcatagaacgtacagcagaaaatattcgtaatttagttccagaagcgcgtgtcgct
gttgcgcatggacagatgcgtgagcgtgaattagaacaagtgatgcaacagttttatcat
aaagaatataatgttctggtctgttcaaccattatcgaaactgggattgacgttccaaat
gccaatacgattattatggaacgtgcagataagttaggactggcacaattacatcaattg
cgcggacgtgtagggcgctcgcatcatcaagcttacgcatatttgttggtgccttcaatc
aaacatcttaaaggcgatgctgaaaaacgtctggatgccattcagcgcgcatcaacactg
ggggctggctttatgctggcgactgaagatttagaaattcgtggagcaggtgaattactg
ggtgaacagcagagtggttcgatgcaggcaattggttatagtttgtatatggagatgctt
gaaaaagcgactaaggctattcaaaagggcaaaacgccaaactttgatgcgccattgtct
ttaaccgccgaaatcaatttgcatatgcctgctttaattccagatgaatatttaggcgat
gtacatcagcgtttgctgttttataaacgaattagtaacacagatacgcaggaaaaactg
gataacattcgaatggagctaatagaccgttttggaacgcttccagtatcagtaaaacaa
ttgttccatgtacatcagttaaggttacaagcagaagagttgggaatcactaaaattgat
ttgaacagtcaggggggatatatcgagttttctcaagatactcctgttcaggcgattagt
attattcagctcatgcaaaaacaacccacatactatcgtatggagggtggtcagcgtcta
aaggttacagtgcagttgcaagaatacgataaacgaattcagtttgcgcacgcgttatta
tcaaaactaattcaggagctacattcttattcctga
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