Acidilobus sp. 7A: SE86_00800
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Entry
SE86_00800 CDS
T05595
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
acia
Acidilobus sp. 7A
Pathway
acia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SE86_00800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acia03019
]
SE86_00800
03400 DNA repair and recombination proteins [BR:
acia03400
]
SE86_00800
Enzymes [BR:
acia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SE86_00800
Messenger RNA biogenesis [BR:
acia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SE86_00800
DNA repair and recombination proteins [BR:
acia03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SE86_00800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Nrap_D3
Motif
Other DBs
NCBI-ProteinID:
AMD30200
UniProt:
A0A109V3T9
LinkDB
All DBs
Position
163589..167623
Genome browser
AA seq
1344 aa
AA seq
DB search
MQALVVAAGAAAAAGAVAYVAYRRRLLARLITSARLAMNPDSIVDVAQRAEDLGVSRQRI
SSLVRSMPRCPRGSERLAEALLSLGLYEDVVYLASRGCSVHSTTLSRARAYSMGLGLSKW
ETEASRLLGEQPRLLGSSKVMVAFCEGGHVEVMVDGVVSEVPPPGGSWRSPPQDEVMSSI
AQLSGAQLLISWGPCNLKGAVDAKLLLSIAYPDVRPSIASIAYNLGLNPMLPPSAIVLAA
VRASVEALSRVGVDWSTMPEAVRGAEAIAKFKDIVDRVVGQQSPREGRAIVVTDRPRAFM
PVWRPFLVDPSRAKGVSYQVLASLRSLTSRGGDPLRALRNAPLLGDFGKALAEALRASLV
PATAGPRPGSQVEPWDLACLGDLEVTLDCARSYELCLRPQAPPPDEEELLRSLRVRCPGG
SNIRFSASTYVPRRLAEALGLSAPSKGRVKAYGELIAGGPRGASDAVASALAMTSRASRP
LIVVPSRALAEATAKAYGIPLVTPDAVDTWTVRGGPGVIPWDDYLAAPEAAGVADTTVLV
FPERMIWAEQDDTPYGVHGKLVDAVVELVAKNGGMAVSRALQAEASSRDDVELVEPPASG
AAQVNIGPEDIMAEAERAFRRLWGEGAQLRPYQRLAIRVLAEMASRGTSSALMAILPTGA
GKSAIFQVSARALEDMGLGSTAIVISPLRALMHDQVRNAKQRGLRAAYIDSGVPPSRKGE
IIAAAKEGLLDLVYVTPEGFGTGAASELARSAGQASLAVLDEAHTLSRWGLSFRPSYLYV
ARQLREASSSSWPPMLALTASAPPDVVKDIMEELGLGEHEEHRISLGVETEDIHFSGRPI
VLRAPSIRPEISIDVVMARSGRERLDDIADRVEELTKWADSLGGPWVGVVFVPFVQSSSE
PWLNADEVAKAINGRLGEEVLVYHGQLGEARRREVEERIIMSSRTGRGPRVVVATKAFGM
GVDIPNIRWTLHAAPSESVEDMYQEIGRAGRDGKPARAVILYNPSDLEARKAMARGDAIK
PLRVQRALNIIEGTLESLRRREGPAPLPIKDASGEWGLVRYLDVLRMTGVIDYEVIRGPV
LAYDAPRERVEEEAGWCAELREGQCLSRAIRGLEGRRAFLNLCDGRASISLEQAQGCKAV
SYDSLVALVSPSPDWKKPKKYLDPELYATTLWLSLREVRKLRELSELLEAAVAARARGGP
ALVDSQVKRMMDESLARGVRPPLGGVRLGRVVRCDTAEECVEQAVMDAAEIERLVGEGSV
VVGASGVAASLFSARYLRQTGRSPQVSVSYYRKLAALARRGELEKAMNMGYVIIIARQGA
KVEEVVKLAHGYPYANFYLYARRT
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
ttgcaggccctcgtagtagctgccggcgcagcggcggcagcgggagcggttgcctacgtc
gcctacaggaggaggctgctggccagactgattacctcggccaggcttgccatgaaccct
gacagcatagtcgatgtggcacagagggcagaggacctcggcgtgagcaggcagaggatc
tcctccctggtaaggtcaatgccaagatgtcccaggggctcggagaggctggccgaggcc
ctcctctcgctgggcctctacgaggacgtggtgtacctggcctcaaggggctgctctgtg
cactcgacgacgctcagcagggcaagggcctactccatgggcctcggcctgtccaagtgg
gagacagaggcctcaaggctcctgggagagcagccaaggcttctgggcagctccaaggta
atggtagcgttctgtgaggggggccacgtggaggtcatggttgacggcgtcgtctctgag
gtgcctccccccgggggctcctggaggtcgccgccccaggacgaggtcatgagctccata
gcgcagctctccggggcccagctcctgataagctggggcccctgtaacctgaagggagcc
gtggacgcaaagttgctcctctcaattgcgtacccggacgtgaggccatccatagcgtcg
atagcctacaaccttggcctgaaccccatgctgcccccctcagccatagtgctcgcagcg
gtcagggcatccgtggaggccctcagcagggtgggcgttgactggtctacaatgccggag
gccgtaaggggggcggaggccatagctaagttcaaggacattgtggacagggtcgtgggc
cagcagagccccagggagggcagggccatagttgtcacggacaggccgagggcattcatg
ccggtgtggaggcccttcctagtggacccctcaagggctaagggcgtcagctatcaggtg
ctagcctccctcaggtccctgacctcaaggggaggggacccgctgagggccctgaggaac
gcgcccctcctgggcgacttcggcaaggctcttgctgaggccctcagggcctccctggtg
cccgccacagcgggcccaaggccgggctcccaggttgagccctgggacctggcctgcctt
ggagacctggaggtaacgcttgactgcgcccgcagctacgagctttgccttaggccccag
gcgcccccgccagacgaggaggagctgctgaggtccctgagggtcaggtgccctggcggc
tcaaacatcaggttcagcgcaagcacctacgtgcccaggaggctggccgaggccctgggc
ctcagcgccccctccaaggggagggtgaaggcttacggggaactcatagcgggtggacca
aggggggcctccgatgccgtggcgtcagccctagccatgacatctagggcctccaggccg
ctaatagtcgttccatcgcgcgccctcgcggaggcgacggccaaggcctatggaattccc
ctggtgacgcctgatgccgtggatacatggactgtcaggggagggcctggggtcatccca
tgggatgactacctagccgccccggaggcggcgggcgtcgctgacacgaccgtactcgtc
ttcccggagaggatgatctgggcagagcaggacgacacgccatacggagttcacgggaag
cttgttgacgccgtggtcgagctggtcgctaagaacggcggcatggcggtctcaagggcc
cttcaggccgaggccagctcaagggacgacgttgagctcgttgagccgcccgccagcggg
gctgcgcaggtcaatataggccctgaggacataatggccgaggccgagagggcgttcagg
cgcctctggggcgagggggcgcagctcaggccctaccagaggctggcgataagggtcctc
gccgagatggcctccagagggacgtcctctgccctcatggccatacttcccacgggggca
gggaagagcgccatattccaggtcagcgccagggccctcgaggacatgggacttgggtcg
acagctatagtgataagccccctgagggccctcatgcatgaccaggtcaggaacgccaag
cagagggggctgagggcagcctacatagactcaggggtcccgccatcaaggaagggcgaa
atcatagccgccgccaaggagggcctcctcgacctggtctacgtcacgcccgagggcttc
ggcacgggggcagcctccgagctcgcgaggtcggcggggcaggcgagcctcgcggtgctt
gacgaggcccacacgctttcaaggtggggcctgagcttcaggccgagctacctgtacgtg
gcgaggcagctgagggaggcctcatcgtcaagctggccgcccatgctggcgctgacggcc
tcagcccccccagacgtggtcaaggacataatggaggagctgggcctgggggagcacgag
gagcacaggatatccctgggcgttgagactgaggacatacacttcagcggcaggccgata
gtcctgagggccccatcgataaggcctgagatatcgatagacgtagtcatggctaggtct
gggagggagaggcttgatgacatagctgatagggtggaggagctgaccaagtgggccgac
tcgctgggcggcccgtgggttggcgtcgtcttcgtgccattcgttcagagctcctcggag
ccgtggcttaacgccgacgaggtagccaaggcgataaacgggaggctcggtgaggaggtc
ctcgtctaccacggccagctcggggaggcgaggaggagggaggtcgaggagaggataatt
atgtcatcgaggacgggcagggggccgagggtagtggtggcaaccaaggccttcggcatg
ggcgtcgacataccaaacattaggtggaccctgcacgccgccccaagtgagagcgtggag
gacatgtaccaggagataggcagagccgggagggacgggaagccagccagggctgtcata
ctctacaacccctccgacctcgaggccaggaaggcaatggcaagaggtgacgccataaag
cccctgagggtccagagggccctcaacataatagaggggacccttgagagcctgaggcgc
agggagggccccgctcccctgccgattaaggacgcgagcggcgagtggggccttgtgagg
tacctggacgtcctcaggatgacgggcgtcatagattacgaggtcattagggggcccgtc
ctcgcttacgacgccccaagggagagagtcgaggaggaggccgggtggtgcgctgagctt
agagagggccagtgcctctcaagggctataaggggccttgagggcaggagggccttcctt
aacctctgcgacggccgcgcctcaatatcccttgagcaggcccagggctgcaaggccgtg
agctacgatagcctcgttgccctagtgtcgccctcgccagactggaaaaagccaaagaag
taccttgaccctgagctctacgccaccaccctctggctctccctgagggaggtgaggaag
ctgagggagctctcggagctgctggaggccgcggtcgcggccagggccaggggaggcccg
gcgcttgtggactcgcaggtcaagaggatgatggatgagtcccttgcaagaggcgtgagg
cctccgcttgggggagtgaggctcggcagggtcgtcaggtgcgacacagccgaggagtgc
gtcgagcaggcagtgatggacgctgcagagatcgagaggctcgtgggcgagggctcggta
gtcgtgggcgcctcgggcgtcgccgcctcgctcttctccgccaggtacctcaggcagacc
ggcaggtcgccgcaggtctccgtaagctactacaggaagctcgcggccctcgcgaggagg
ggggagctggagaaggccatgaacatggggtacgtgataattatagccaggcagggcgcc
aaggttgaggaggtggtgaagctggcccacggctatccctacgctaacttctacctctac
gcgaggagaacttaa
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