Aliarcobacter cibarius: ACBT_0304
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Entry
ACBT_0304 CDS
T06760
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
acib
Aliarcobacter cibarius
Pathway
acib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACBT_0304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acib03019
]
ACBT_0304
03400 DNA repair and recombination proteins [BR:
acib03400
]
ACBT_0304
Enzymes [BR:
acib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACBT_0304
Messenger RNA biogenesis [BR:
acib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACBT_0304
DNA repair and recombination proteins [BR:
acib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACBT_0304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrD-helicase
AAA_19
UvrD_C
Helicase_C
UvrD_C_2
Viral_helicase1
AAA_22
AAA_30
HTH_36
malic
FtsK_SpoIIIE
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QKJ26280
UniProt:
A0A7L5JMC6
LinkDB
All DBs
Position
complement(342084..346883)
Genome browser
AA seq
1599 aa
AA seq
DB search
MNNIIFCDIEASIKTKKINEVGLVYKNSNFKTSSIEEAKKFISICKTDFISGHNFIDFDL
NILKYSSLYKDIVNYKIIDTLPLSLLLFNEKTIHSLPKNYKNEDDFDNNPVEDSKITAIL
FDKLLERFNEIPNDTKNIFYSLLKNNQYFSGFFEYICLSTKLIDLNFEDLFNLIKNKHNK
TIVNFEYLKDVLISNKVELAYILALLTPYIEIKAHPPKILFSYPNIVEIQKKLCFDRELS
NKILSDFSKEVFGFGTFREFPRLNANILDNPSISQREIVEASLRDESFLAILPTGGGKTF
TFWLPAIFKSNSYKGLTVVISPLQALIEDHIKSFNLKVANYKAVAISGFMSPLERSEAVE
QVVNGEADILYIAPESLRSNTIFNILKNRLIERFVIDEAHCLSTWGNDFRQDYYYICEFI
KDLLDKKNFQNHIPISCFTATGKPSVIKDIENYFLEGLSIKLDKYLAVPERKNLKYKSIP
SSGKYKYLELLKLINEHDGATLVYIPTSTKNCDEIANKIAMDTNKIVKSFHSKIESQEKM
QILKDYIENRVDIIVATTAFGMGVDKANITNVIHYEISDSLENYAQEAGRGARDENFEAY
CPILFDEDDLDKHFVSLNRSKLTASEINSIFLVIKRSKGNAINKTAFELAKDAGWDVEDK
SSDYSTKVKTALLELEREGYISRKRNKTNFFADSIVSKSMEKLHIKLKESFYSEEEKQRL
ILVLQNIIGRGKPEAVQVDELAHILGYTKNEISLAINQLKQLELLGDSKDLSLEISIYSL
NKFKKIKEIELVLFNYLELLNSSRVRIRELNEELNKKELTTKNESELIKSIIKNWRSKSN
FIFSRQNREQDLWYFKFENLQNLKDRIHKNHIISEKTLSILTKDLNNKQKEEIVISLKIL
HDSMNKEYDIEEIDKALLYLHHLNILELLKGRFINYSPMIIEKEEKFQTKRKYTNNEYKN
RLEQHYQTKIESIHIMGEYAKRLKDDDHKAILFLRDYFTLSYENFKDKYKLSKEKISKPI
TQKRYNKIFEKMSEEQKEIINDKDTKAMMILAGPGSGKTKVLVHKIASLILTEDIKPEQF
MMLTFSKSAKMEFKTRLNSLIGALSYDVEIQTFHSYALKLIARVANKENKIILENAIEEA
TRQINEKEITLPHITILVLDEFQDINEKSFEFVKAIYKATNEDIKIIAVGDDDQCIMDFN
GAQVNFIDKYKKEFGYDEDGNEVYKQYELLCNFRSKKDIVNYSNDFITKVTKRYKTKPLY
SNSLDSGSINIYSFLSKNMIIPLIELVKQEKSISNIAILVKTNEMVLDIYSILQDNNIDA
RYLIERDKFELKNIIELIEFDKVLNSYLEEEISYKEIYFEKALKFTESKFKNSVNISLLH
KIIDKFLNESDSYKISEWISYLEEIRLEDFEIYNKNIIISTIHKSKGLEFDKVYLLVDGN
PINDEEKRLFYVGMTRAKDELNIFRNGRDISNKKDYIKYFYDEQQYLIESKTFTHVMSLE
DLNLGFDYEKFVVNNSLISGVKLTIEKKENFKNLCLIFENKIVATLSSRFNLLILEKFEK
GYLFKDCIVEYIVLWEDKNLNKVLKHPLCKIIMQKNIIT
NT seq
4800 nt
NT seq
+upstream
nt +downstream
nt
ttgaataatataattttttgtgatattgaagctagtattaaaactaaaaaaataaatgaa
gtaggactagtttataaaaattctaattttaaaacatcttcaatagaagaagcaaaaaaa
tttattagtatttgtaaaacagattttatttcaggacataatttcatcgattttgattta
aatatattgaaatatagtagtttatacaaagatatagtaaattataaaataatagatact
ttaccattgtctttactactttttaatgaaaaaacaatccatagcttaccaaaaaattat
aagaatgaagatgattttgataataatccagttgaagattctaaaattactgctatatta
tttgataaattattagaacgatttaatgaaataccaaatgatactaaaaatatattttac
tcacttcttaaaaataatcaatattttagtggtttttttgaatatatatgtttaagtact
aaattgatagatttaaattttgaagatttattcaatttaataaaaaataaacataataaa
actattgttaattttgagtatttgaaagatgtattgatttcaaataaagttgaattagct
tatatattagctttattgactccatatattgaaattaaagctcatcctccaaagatttta
ttttcttatccaaatattgttgaaatccaaaaaaaactttgttttgatagggaattatca
aataaaattttaagtgatttttcaaaagaagtttttggatttggtacatttagagaattt
ccacgattgaatgccaatattcttgataatccatctatttcacaaagagaaatagtagaa
gcttctttaagagatgaatcttttctagcaattttaccaacaggtggtggaaaaactttt
actttttggttacctgcaattttcaaatcaaattcttataaaggtttaacagtagttatt
tctccacttcaagctttgattgaagatcatataaaaagttttaatttgaaagttgcaaat
tataaagcagttgcaattagtggattcatgagcccattagaaagaagtgaagcagttgaa
caagttgttaatggtgaagctgatattttatatatagcaccagaatctttacgttcaaac
acaatatttaatattttaaaaaatagacttattgaaagatttgttattgatgaagcacat
tgtttatcaacttgggggaatgattttaggcaagattactattatatatgtgaatttata
aaagatttgttagataaaaagaattttcaaaatcatattccaatttcatgttttactgca
acagggaaacctagtgtaataaaagatatagaaaattactttttagaaggattatcgatt
aaacttgataaatatttagctgtacctgaaagaaaaaatttaaaatataaatcaatacca
tcaagtggaaaatataagtatttagaacttttaaaattaataaatgagcatgatggtgca
actttagtttatattccaacatctacaaaaaattgtgatgaaatagcaaataaaatagca
atggatacaaataaaatagtaaaatcttttcattcaaaaattgaatctcaagaaaagatg
caaatattaaaagattatattgaaaatagggtagatataattgttgcaacaactgctttt
ggaatgggagttgataaagcaaatattacaaatgttatacattacgaaatatctgattcc
ttagaaaattatgcacaagaagctggaagaggggctagagatgaaaattttgaagcatat
tgtcctattttatttgatgaagatgatttggataaacattttgtttcattaaatagatca
aaattaactgcaagtgaaataaattctatatttttagtaattaaaagatcaaaaggtaat
gcaattaataaaacagcatttgaattagcaaaagatgctggttgggatgtagaagataaa
tcatcagactacagtactaaagttaaaacagcattattagaactagaaagagaaggttat
attagtagaaaaagaaataaaactaatttttttgctgattctatagtttctaaatcaatg
gaaaaattacatataaagctaaaggaatcattttattctgaagaagaaaagcaaagatta
atacttgttttacaaaatattattggaagaggtaaacctgaagcagtgcaggttgatgaa
ttagcacatattttaggatacacaaaaaatgaaatttcattagctattaatcaattaaaa
caattagaacttttaggtgacagtaaagatttaagtttggaaataagtatttatagttta
aataaatttaaaaaaattaaagagatagaattagtactgtttaactatttagagttatta
aatagttcaagagttagaattagagaattaaatgaggagttaaataaaaaagagttaact
acaaaaaatgaatctgaattaattaaatcaataattaaaaattggagaagtaaatcaaat
tttatttttagtagacaaaatagagaacaagacttatggtattttaaatttgagaactta
caaaatttaaaagatagaattcacaaaaaccatataattagtgaaaaaactttatctatt
ctaacaaaagatttaaataataaacaaaaagaggaaattgttatctctttaaaaatatta
catgactcaatgaataaagaatatgatattgaagaaattgataaagcattattatattta
catcatttaaatattttggaattattaaaagggcgatttataaattattctccaatgatt
atagaaaaagaagaaaaatttcaaacaaaaagaaaatatacaaataatgagtataaaaat
agattagaacagcattatcaaacaaaaatagaatctattcacataatgggagaatatgcg
aaaaggttgaaggatgacgatcataaagccattttatttttaagagactattttacttta
tcttatgagaattttaaagataagtataaactttcaaaagagaaaatctcaaaaccaatt
actcaaaaaagatataacaaaatatttgaaaaaatgtcagaagaacaaaaagaaattatt
aatgataaagatacaaaagctatgatgattcttgctggtccagggagtggtaaaactaaa
gttcttgtccataaaattgcttctttgattttaactgaagatataaagccagagcaattt
atgatgttaactttttctaaaagtgcaaaaatggagtttaagacaagactaaatagttta
attggtgctttgtcttatgatgttgaaattcaaacatttcactcatatgcactaaaatta
attgcaagagtagcgaataaagaaaataaaataattcttgaaaatgctattgaagaggca
acaagacaaataaatgaaaaagagataactttaccacatattactattttagttttagat
gaatttcaagatattaatgaaaaaagttttgagtttgtaaaagcaatttataaagcaact
aatgaagatattaaaattattgctgttggagatgatgatcaatgcataatggattttaat
ggagcacaagttaattttatagataaatataagaaagagtttggttatgacgaagatggt
aatgaagtatacaaacaatacgagttactttgtaactttagaagtaaaaaagatattgta
aattattcaaatgattttattacaaaagtaacaaagcgttataaaactaagcctttatat
tcaaatagtttagattctggttcaataaatatttattcttttttatcaaaaaatatgata
attcctcttatagagcttgtaaaacaagagaaaagtataagtaatattgcaattttggta
aaaacaaatgaaatggttttagatatttattcaatattacaagataataatattgatgct
agatatttaattgaacgagataaatttgaattaaaaaatataatagaattaattgaattt
gataaagttttaaatagctatttagaagaagagatatcttacaaagagatttattttgaa
aaagcattaaaatttacagagagtaaatttaaaaattctgtgaatatatctttacttcat
aaaattattgataaatttttgaatgaaagtgacagttataagatttcagagtggattagt
tatttagaagagataagattagaagattttgaaatttataataaaaatataattatttca
acgattcataaatcgaaaggtttagaatttgataaagtctatctattagtagatggaaac
ccgataaatgatgaagaaaagagacttttttatgttggaatgacaagagcaaaagatgaa
ttaaatatatttagaaatggaagagatattagcaataaaaaagattatataaaatatttt
tatgacgaacaacagtatctcattgaaagtaaaacatttactcatgtaatgtctttagaa
gatctaaacctaggatttgattatgaaaaatttgttgtgaataattcattgatttctgga
gttaaattaactattgagaaaaaagagaattttaaaaatttatgtttaatatttgaaaat
aaaatagtagcaacattatcaagtagatttaatttattgatactggaaaaatttgagaaa
ggttatctatttaaggattgtattgtagaatatattgttttatgggaagataaaaattta
aataaagttttaaaacatcctctttgtaaaattattatgcaaaagaatataatcacttaa
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