KEGG   Aliarcobacter cibarius: ACBT_0559
Entry
ACBT_0559         CDS       T06760                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
acib  Aliarcobacter cibarius
Pathway
acib03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:acib00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    ACBT_0559 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:acib03021]
    ACBT_0559 (rpoC)
   03400 DNA repair and recombination proteins [BR:acib03400]
    ACBT_0559 (rpoC)
Enzymes [BR:acib01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     ACBT_0559 (rpoC)
Transcription machinery [BR:acib03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     ACBT_0559 (rpoC)
DNA repair and recombination proteins [BR:acib03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      ACBT_0559 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 Apocytochr_F_C RPOC_hybrid
Other DBs
NCBI-ProteinID: QKJ26513
UniProt: A0A7L5JMP9
LinkDB
Position
592230..596756
AA seq 1508 aa
MSNNEKVLAPIEIKELERPQDFSAFQLRLASPEKILAWSCGEVKKPETINYRTLKPERDG
LFCAKIFGPVKDYECLCGKYKKMRYKGVVCEKCGVEVTSSKVRRHRMGHIELVSPVAHIW
MVSSLPSRIGTLLGVKLKDLERVLYYEAYIVNEAGEAYYDGERTKKIEKYDILNEEQYRT
VADLFEHTGFEAKMGGEVVKDLLEKLDLFQLLTLLKDEMQSTKSEAKRKTIIKRLKIVEN
FINSGNRPEWMMLTQLPVLPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNNRLKRLTELD
APEIIIRNEKRMLQEAVDALFDNGKTANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKR
VDFSGRSVIVVGPNLNMDQCGIPKKMALELFKPHLMAKLEEKGYATTLKAAKRLIESETN
EVWECLNEIVDEYPILLNRAPTLHKLSIQAFHPVLIDGKAIRLHPLVCAAFNADFDGDQM
AVHVPLSQEAVAEAKVLMMSSMNILLPASGRAIAVPSQDMILGIYYLSLVKEGVKGEHKL
FTDVNEVKIALEMDQIDLHAKIRTKIDDKIVQTTVGRLIIHEILPPFVPMSLWNKILKKK
DIGALVDYIYKEAGYEVTPRFLDNLKNLGFKYATKAGISISIDDIRVPESKVEHITKSKK
DVIEVQKQFFQGLLTEQERYNKTIDIWTETNNKLGSQMMELVKADKNGFNSIYMMADSGA
RGSATQIRQLSGMRGLMAKPDGTIIETPIISNFKEGLNVLEYFISTHGARKGLADTALKT
ANAGYLTRKLIDVSQNVRITAEDCGTHEGIEITDITSGNELIESLEERITGRVIAEDIID
PVSNEILFAEGTLITEEYARTVIEAEVKSVIIRTPLTCKVENGLCSQCYGLNLGEQRKAK
PGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASATQTEKELKADKEGFIRYYNIKKYDTAD
GRSIVANRRNAGVLLVEPKINAPFKGKVSVETIHEEIELTITNGKDTKKYYLRKSDVAKV
NELAGISGKIEGKLYLPYKDGHEVEHNDSIVEIIKDGWNVPNRIPYASELKVADGAPITS
KVIAGAKGIVKYYKLTGDYLERRHDIKAGDKVVEKGLFAVVADTDDREAIRHYISRGSSI
ALNDNSEVEKDTIISSPTVSEQTVIAEWDPYANPTIAEKPGVISFEDIIPGVTVSEQFDE
LTGTSKLVVNEYIPSGYKPTVIVATDDNEIMKYVLDPKASLNIAEGKRVEIADIIAKTPK
ATQKSKDITGGLPRVSELFEARRPKNIAILASFDGIVTFGKPLRNKQKLVITDENGNTTE
YLVEKGKHILVHEGEFVHAGEALTDGQVSPHDVLRILGEKALHYFIVSEVQQVYRSQGVN
IADKHIEVITSQMLRQVSILDGGDTKFIVGDMISKKKFKIENEKIVRMGGQPAIAEPVLL
GITRAAVTSDSIISAASFQETTKVLTEAAISAKMDMLEDLKENVVIGRTIPVGTGLYKDY
KVKFSEAK
NT seq 4527 nt   +upstreamnt  +downstreamnt
atgagtaataatgaaaaagtactagcaccaatagaaattaaagagttagaaagaccacaa
gatttttcagcgtttcaattaagactagcaagtcctgagaagattcttgcttggtcttgt
ggtgaagtaaaaaaacctgaaacaattaattatagaacattaaaaccagaaagagatggt
ttattttgtgcaaaaatctttggaccagtaaaagattatgagtgtctttgtggtaagtat
aaaaagatgagatataagggtgttgtttgtgaaaaatgtggagttgaagtaacttcatca
aaagttagaagacatagaatggggcatattgaattagtatctcctgttgcacatatttgg
atggtttcttctcttccttcaagaataggaacacttttaggtgttaaattaaaagatctt
gaaagagttttatattatgaagcatacattgtaaatgaggcaggtgaagcttattatgat
ggtgaaagaactaaaaaaattgaaaaatatgacatcttaaatgaagaacaatacagaacg
gttgcagatttatttgaacacactggttttgaagcaaaaatgggtggagaagttgtaaaa
gatttattagaaaaattagatttatttcaactgttaactctattaaaagatgaaatgcaa
tcaacaaaatctgaggcaaaaagaaaaacaattattaaaagattaaaaattgttgaaaac
tttataaatagtggaaatagacctgaatggatgatgttaactcaacttccagttttacca
ccagatttaagacctctagtttcacttgatggtggaaaattcgccgtttctgacgtaaat
gatctttatagaagagttattaatagaaataacagattaaaaagattaacagaacttgat
gctccagaaattattattagaaatgaaaaaagaatgcttcaagaagcggttgatgcttta
tttgataatggtaaaacagcaaatgctgtaaaaggtgcaaataaaagaccattaaaatct
ttaagtgaaatcattaaaggtaaacaaggaagatttagacaaaacttacttggaaaaagg
gttgacttttctggaagatctgtaattgttgttggtccaaatttaaatatggaccaatgt
ggtattccgaagaaaatggctttagaattatttaaaccacatttaatggctaaacttgaa
gaaaaaggttatgcaactacattaaaagctgcaaaaagattgattgaatctgaaactaat
gaagtttgggaatgtttaaatgagattgttgatgaatatccaattttattaaacagagct
ccaactcttcacaagttatcaattcaagctttccacccagttttaattgacggaaaagct
attagattacatccactagtttgtgctgcctttaatgccgactttgatggggatcaaatg
gctgttcacgttccactttctcaagaagcggttgctgaagctaaagttttaatgatgagt
tcaatgaatattcttttaccagcatctggtagagctattgcagttccttctcaagatatg
attttaggtatttactacctatcattagttaaagaaggtgtaaaaggtgaacacaaatta
ttcactgatgttaacgaagttaaaattgctctagaaatggatcaaattgatttacatgca
aaaattagaactaaaattgatgataaaattgttcaaactactgttggaagactaattatt
catgaaattttaccaccatttgttcctatgagtttatggaataaaattttaaagaaaaaa
gatattggagctttagtagattatatctacaaagaagctggatatgaagtaactccaaga
ttcttagataatttaaaaaatctaggatttaagtatgcaacaaaagcaggtatttcaata
tcaattgatgatattagagttcctgaaagtaaagttgaacacattactaaatctaaaaaa
gatgttattgaagttcaaaaacaatttttccaaggtcttttaacagaacaagaaagatat
aacaaaactatcgatatttggacagaaactaataacaaattaggttctcaaatgatggaa
ctagttaaagctgataaaaatggatttaactctatttatatgatggcagattctggagca
agaggtagtgcaactcaaattagacagttatcaggtatgaggggtcttatggctaaacct
gatggaactattattgaaacaccaattatctctaactttaaagaaggattaaatgttctt
gagtactttatttctactcacggagctagaaagggacttgctgatacagctttaaaaaca
gcaaatgctggatatttaacaagaaaactaattgatgtttctcaaaatgttagaattaca
gctgaagattgtggtactcatgaaggtattgaaattactgatattacatcaggaaatgag
ttaattgagtctttagaagagagaatcactggaagagttattgctgaagatattattgat
ccggtttcaaatgaaatattatttgctgagggtacattaataactgaggaatatgcaaga
acagttattgaagctgaagttaaatcagtaattattagaactccactaacttgtaaagtt
gaaaatggattatgttctcaatgttatggattaaacttaggtgagcaaagaaaagcaaaa
ccaggtgaggcagttggagttgttgctgctcaatctattggagaaccaggaacacagctt
acacttagaacattccacgttgggggaactgcaagtgcaactcaaacagaaaaagagtta
aaagctgataaagaagggttcattagatattacaatatcaaaaaatatgacacagcagat
ggaagatctattgttgcaaatagaagaaatgcgggtgttttattggttgagccaaaaatt
aatgcgccatttaaaggaaaagtttcagttgaaacaattcatgaagaaatagaattaaca
attacaaatggtaaagatactaaaaaatattacttaagaaaaagtgatgttgctaaagta
aacgaacttgctggaatttctggaaaaattgaaggtaaactttatctaccatataaagat
ggtcatgaagttgaacacaatgattctatagttgaaattattaaagatggatggaatgtt
ccaaatagaattccttatgcttctgaattaaaagttgcagatggagctcctataacttct
aaagtaattgctggtgcaaaaggaatagttaaatactataaattaactggagattattta
gaaagaagacatgacattaaagctggtgataaagttgtagaaaaaggactttttgctgtt
gttgctgatactgatgatagagaagctattagacactatatttcaagagggtcttcaatt
gctttaaatgataatagtgaagttgaaaaagatactattatatcatctcctactgtttca
gaacaaactgtaattgcagagtgggatccatatgcaaatccaacaatagctgaaaaacca
ggtgttattagctttgaagatattattccaggagttactgtatctgagcaatttgatgag
ttaacaggaacttctaaactagttgtaaatgaatatattcctagtggatataaaccaaca
gttattgttgcaacagatgataatgaaataatgaaatatgtattagatcctaaggcatca
ttgaatatagctgaaggaaaaagagtagaaatagcggatattattgctaaaactccaaaa
gctactcaaaaatctaaagatattactggaggtcttcctagagtttctgaattatttgaa
gcaagaagaccaaaaaatattgcaattttagcttcatttgatggaattgtgacatttggt
aaaccattaagaaataaacaaaaattagtgattactgatgaaaatggaaatactacagag
tatttagtagaaaaaggtaaacatatactagttcatgaaggtgagtttgtacatgctggt
gaagcattaacagatggacaagtttctcctcatgatgtattaagaattttaggtgaaaaa
gcacttcattactttattgtttcagaagttcaacaagtttatagatctcaaggggtaaat
attgctgataaacatattgaggtaattacatctcaaatgttaagacaagtgtccattctt
gatggaggagatactaagtttatagttggtgatatgatttctaaaaagaaatttaaaatt
gaaaatgaaaaaattgtaagaatgggtggacaacctgcaattgcagaacctgtactttta
ggtattacaagagcagctgttacaagtgatagtattatctctgcagcatctttccaagaa
actacaaaagtattaacagaagcagcaattagtgcaaaaatggatatgcttgaagattta
aaagaaaatgttgtaataggaagaacaattcctgttggaacaggtctatataaagattac
aaagtaaaattctcagaagcaaaataa

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