Aliarcobacter cibarius: ACBT_1102
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Entry
ACBT_1102 CDS
T06760
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
acib
Aliarcobacter cibarius
Pathway
acib02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
acib00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACBT_1102 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acib03021
]
ACBT_1102 (rpoD)
Transcription machinery [BR:
acib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACBT_1102 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
Sigma70_r4_2
FAM176
Motif
Other DBs
NCBI-ProteinID:
QKJ27014
UniProt:
A0A5J6RFK4
LinkDB
All DBs
Position
complement(1127490..1129361)
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AA seq
623 aa
AA seq
DB search
MSTKDINKVIEQLIKEYKDSVLTYEKIIKIFPKAPTGATIKKILALVQLYNVTVISSQEQ
AKLLNDEEAKKRREQREKLIESEDDEFDLLKNKELLEWSRSDSPVRMYLREMGQIPLLTK
DEEIEISKRIETGEDIILDAICYVPYLIDFILEYREPLVNRERKVKELFKNFDDENEEEE
EEDLDEFEDEEEYDAEDEEKKLSGAKQKKLDKRAQTIIEAFKNLEKAKKEWLKFQTKETA
KSDDETDLMTFNLATAFKKKLLKEALLDLGPTSKLITEIVKAMETSLKSEDGFEDELKRL
EYRLPLFNETLQKNHQKILDNIVNLSKAQITAMVPEATMVSTYMEIKKLFQTAEASKDGF
DLTPEELKAVLEQIKRGKQITDTSKTRMAQSNLRLVVSIAKRYTNRGLPFLDLIQEGNIG
LMKAVDKFEYKKGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRINKIIRKGV
QENGKEPDVEEIAKEVGLPVDKVKQVIKITKEPVSLEAPIGSDDDGKFGDFVPDEKAPTP
IDNIMKEDLQGQIDQILGQLNEREQAVIRMRFGLMDDASDRTLEEIGKELSVTRERVRQI
ESSAIKKLKHPKVGKNLKNYVES
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgagtacaaaagatataaataaagtaattgaacagcttataaaagagtataaagactca
gttctaacatacgaaaaaattatcaagattttcccaaaagcaccaacaggagctactatt
aagaaaattcttgcgcttgttcaactatataatgtaacagttattagttctcaagaacaa
gcaaagctactaaatgatgaagaagctaaaaaaagaagagaacaacgtgaaaaattaatc
gaaagtgaagacgatgagtttgacttattaaaaaataaagaacttctcgagtggtcaaga
tcagattcacctgtaagaatgtatttaagagaaatgggacaaattccacttttaacaaaa
gatgaagagatagagatatcaaaaagaattgaaactggtgaagacataattcttgatgca
atttgttatgttccttatctaatagatttcattttagagtatagagaacccctagttaat
cgagagagaaaagtaaaagaactattcaagaacttcgacgatgaaaatgaagaagaggaa
gaagaagatcttgatgaatttgaagatgaagaagaatacgatgcagaagatgaagagaaa
aaattatctggtgcgaaacaaaaaaaactagataaaagagcccaaactattattgaagca
tttaagaatttagaaaaagcaaaaaaagagtggttaaaatttcaaacaaaagagacagct
aaatctgatgatgaaacagatttaatgacttttaatcttgcaactgcatttaagaaaaaa
ttattaaaagaagctcttttagatttaggaccaacttcaaaacttattacagaaattgta
aaagctatggaaacttcattaaaaagtgaagatggatttgaagatgaattaaaaagatta
gaatatagattaccattatttaatgaaactttacaaaaaaatcatcaaaagattttagat
aatattgtaaatttatcaaaagctcaaataactgcaatggttcctgaggctacaatggtt
tctacatatatggaaatcaaaaagcttttccaaacagcagaagcttcaaaagatggattt
gacttaacacctgaagagttaaaagccgttttagagcaaataaaaagaggtaaacaaata
actgatacttcaaaaactagaatggctcaatcgaatttaagacttgttgtatctattgca
aaaagatatacaaatagaggtcttccattccttgatttaattcaagaaggaaatattggt
cttatgaaagctgttgataaatttgagtataaaaaaggttacaaattctcaacttatgca
acatggtggattagacaagcgataagtagagcaattgctgaccaagctagaactattaga
ataccaattcatatgattgaaactattaatagaattaataaaatcattagaaaaggtgtt
caagaaaatggtaaagagccagatgtagaagaaattgcaaaagaagttggattacctgtt
gataaagtaaaacaagttatcaaaattacaaaagaaccagtttctcttgaagctcctatt
ggaagtgatgatgatggtaaatttggagattttgtaccagatgaaaaagctccaacacca
attgataacatcatgaaagaagatttacaaggtcaaattgatcaaattctaggtcaatta
aatgaaagagaacaagctgttattagaatgagatttggtctaatggatgatgctagtgat
agaactcttgaagaaattggaaaagagctttcagttacaagagaaagagttagacaaatt
gaatcaagcgctattaaaaaattaaaacacccaaaagttgggaaaaatcttaaaaattat
gtagagagttaa
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