Acinetobacter sp. Ac-14: IOD65_17645
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Entry
IOD65_17645 CDS
T11083
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
acic Acinetobacter sp. Ac-14
Pathway
acic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IOD65_17645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acic03019
]
IOD65_17645
03009 Ribosome biogenesis [BR:
acic03009
]
IOD65_17645
Enzymes [BR:
acic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IOD65_17645
Messenger RNA biogenesis [BR:
acic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IOD65_17645
Ribosome biogenesis [BR:
acic03009
]
Prokaryotic type
rRNA processing factors
IOD65_17645
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
RBM39linker
HUA1_small
Motif
Other DBs
NCBI-ProteinID:
QOW98914
LinkDB
All DBs
Position
3698537..3701863
Genome browser
AA seq
1108 aa
AA seq
DB search
MKRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY
GAGRQGFLSMREIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISL
AGRYLVLMPNNPKGGGISRQISGSVREELKEILASLNLPRGMSVIVRTAGIGRTQEELQL
DLQHLLDLWAQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYN
FVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSID
INSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKL
REATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSI
MRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSSVRVTVLPHPHLETPHY
EIQYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHTHAAPAANNAANQKKAN
QAAQPAAQASAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGAVSRGQF
GQVVAPAVAEVTSAPSNNAYISQSPVKQEARENVEKDDKVQQQRPNNKKRKHKEQREQHQ
HHHNQEPQQQQVHEEVVQLSRQEQRELKRQQKRQQQDQPHAQHQNDGQQAEHAVPRRDRN
NQQRPNRPNRHRDPSVLNENQNTPAAAAVVDEKQIKVDLIDAPQHEVMNTALVINVDQAQ
SEIIALTPEQPVERTEKAPVVEATQESAPAPVVSVEETVTAEAEAPQPKAEKTQPQVQRA
SNDPRMRRREQRNAKRAKAAAPSIAPSQIPTLAQYTIGSLIRHVYGEDCTVLIEQFGLVP
TFNRALQKFAEQYASTLVTEVAAEAEDKKPVTRDAELPSNKPSQEAEPAPVLPLTPPKEA
TPRVANDPRERRRLAKLAAEQAFEQVKQQHSAPEEAAPVAETVEEAVVAPTAETQAPVES
KQQPLALDQETEVAANVEETPAEPAVEAPVAKQPKAAAKAKAATEQAVEPTEAPAESESE
DSKADKDKPSRPRRPRGRPPKKANPVAE
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgattaatgcaactcacgcagaagaagtccgcgttgcacttatcact
ggtaatcgtctttacgattttgatttagagaatcgtacccgagaacagaaaaaatccaat
atctataaaggccatgtaacccgcgtagaaccatctttagaagctgtttttgttgaatac
ggcgcaggccgtcaaggcttcttgtctatgcgcgaaattgctaacagttatttccaagca
gacccacgacaaacttcaaacattcgtgaacttatcactgaaggtactgaattacttgtt
caagtcgaaaaagaagaacgtggcaataaaggtgcagccctttctacatttatttcactt
gcaggacgttatttggttcttatgccaaacaacccgaaaggtggcggtattagtcgtcaa
atttcaggttctgtacgtgaagaattaaaagaaattctagcttctttaaatttaccgcgt
ggtatgagcgttattgtacgtaccgctggtattggccgtacccaagaagaattacagtta
gacttacagcatttgcttgacctttgggcacaaatccaaggtacagcgagctctggtcct
tctccaatgctggttcatcaagaagctggtgttgttactcgtgctatccgcgattattta
cgtgatgatgttgcagaaattttaattgatagcgaacaggcttataacgaagcttataac
tttgttaaagcagtgatgcctcgtcaattagacaaacttaaaacttatactttaaacgag
ccattgtttgctcattttggtattgaaagtcaaattcaaactgcttatgaacgtgaagta
aaacttccttctggcggttcaattgtgattgaccagactgaagctttagtttcaatcgat
attaactctgcgaaatcgactcgtggacatgacgttgaagaaactgcgctgaatactaac
ttagaagcagcagaagaaattgctcgccaacttcgtcttcgtgacattggtggtttagtt
gtaatcgacttcatcgatatgactaaagagcgcaaccaacgtatggttgaagcaaaactt
cgtgaagcaacacaaagcgatcgcgcacgtattcagtttggacaactttctcgttttggc
ttaatggaaatgagccgtcaacgcttacgtccatctcttgaagaagcaacaggttatgtg
tgcccacgctgtcatggtacaggcatggttcgtgacttacgctcactttcgctttcaatt
atgcgtaaagtagaagagatcgcgcttcgtgaacgtcatggtgaagtacaagtagaagtg
cctgttgaaattgcagcattcttgctcaatgaaaaacgtcatagtcttgtttatttagaa
caaacttctagtgttcgtgtgactgttttacctcacccgcacttagaaacccctcactac
gaaattcagtacaatccagatggatttgcaccatctagctacgaacgtactgaagcaact
cgttcaagtgaaaaagagttaggttatgaatcttctgaatggcatttagaagaagccgat
catggccatactcatgctgctcctgctgccaataatgcagctaatcaaaagaaagcaaat
caagcggctcaacctgctgctcaggcaagcgctcaaaaagcagcaagcccttgtgcatgg
ttagaaaacctttttgttcaaaaacaagctcaaacagttgatcaatctcgctcagcacaa
aatgctgctgccgcaattgaacaaatggtgaatactggcgctgttagccgtgggcagttt
ggacaagttgtagcaccagcagttgcagaagttacttcggctccatctaacaatgcttat
atttctcaatctcctgttaagcaggaagcacgtgagaatgttgaaaaagacgataaagta
caacagcagcgtccaaacaacaaaaaacgtaagcacaaagagcaacgtgaacaacatcag
caccaccacaatcaagaaccacagcaacaacaggttcatgaagaggttgtacagttatca
cgccaagagcaacgtgaattaaaacgtcaacaaaagcgtcaacaacaagatcagccgcat
gcgcaacatcaaaatgatgggcaacaagctgaacatgctgtaccgcgtcgtgaccgtaat
aatcaacaacgtccaaaccgcccgaatcgccaccgcgatccaagcgtattaaatgaaaat
caaaatacgccagcagcagcagcagttgttgatgaaaaacaaattaaggttgatttgatt
gatgctccacagcatgaagtcatgaatacagccttagtcatcaatgttgatcaagcacaa
agcgaaattattgctttaacgcctgagcaacctgttgaacgcactgaaaaagcacctgtt
gttgaagctactcaagaatcagctccagcaccagttgtgtcagtggaagagacggtaact
gctgaagcagaagctcctcaaccaaaggctgagaaaactcaaccgcaagttcaacgtgca
agtaatgatcctcgtatgcgtcgccgtgaacaacgcaatgcaaaacgtgctaaagctgct
gcaccatcaattgccccatcgcaaattccaacgttggcgcaatatacaattggtagcttg
atccgtcatgtttacggtgaagactgcacagtactgattgaacagtttggtttagttcca
acattcaaccgtgcattgcagaaatttgcagagcaatacgcaagtactctagtgactgaa
gtcgcagctgaagctgaagacaaaaagcctgttactcgtgatgccgagcttccaagcaat
aagccttcacaagaagcagaacctgcgccagtacttccgttgacgccaccaaaagaagcg
acaccacgtgttgctaatgatccgcgtgaacgccgtcgtttagcgaaacttgcagctgaa
caagcttttgagcaagttaaacaacaacattctgcaccagaagaagctgcccctgtagct
gagactgtggaagaagccgttgttgctcctactgctgaaacacaagcacctgttgaatca
aagcaacaaccgcttgcgcttgatcaggaaactgaagtagcagctaatgtagaagagaca
ccagctgaacctgcagtagaagctccggttgcaaaacagccaaaagcagctgcaaaagcc
aaagcagctacagaacaagctgtagagccgactgaagctcctgccgagagtgaatcggaa
gattctaaagctgataaggacaaaccaagtcgtcctcgtcgccctcgcggccgtccacca
aagaaagcaaatcctgtagctgagtaa
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