Acidovorax carolinensis NA2: CBP33_10785
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Entry
CBP33_10785 CDS
T04914
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
acid
Acidovorax carolinensis NA2
Brite
KEGG Orthology (KO) [BR:
acid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acid03019
]
CBP33_10785
Enzymes [BR:
acid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CBP33_10785
Messenger RNA biogenesis [BR:
acid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CBP33_10785
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
NACHT
WHD_HA2
AAA_19
nSTAND3
T2SSE
AAA_23
SRP54
nSTAND_NTPase5
AAA_25
PhoH
Myosin_head
Motif
Other DBs
NCBI-ProteinID:
ART48555
LinkDB
All DBs
Position
complement(2299797..2303849)
Genome browser
AA seq
1350 aa
AA seq
DB search
MTASTASTPLHIEFPESLPVSARRDEIMEAMRQHQVIIVCGETGSGKTTQLPKIALALGR
GKCNAKPGQKGQLIGHTQPRRIAASSVAKRIAEELKTPLGDVVGFKVRFQDRLSRDASVK
LMTDGILLAETQTDPLLRAYDTIIIDEAHERSLNIDFLLGYIRQILPRRPDLKVVVTSAT
IDADRFAKHFESAKGPAPIIMVSGRTFPVEQRYRPFEESRDYGLNEAIADGVDELWQGNA
AGDILVFLPGEREIREAADHLRKHLSHQPVMRNAEVLPLFARLSQAEQDRIFDGHTGRRI
VLATNVAETSLTVPGVRYVIDAGTARVKRYSFRSKVEQLLVEPVSQAAANQRAGRCGRVA
NGICIRLYDEASFNSRPRFTDPEILRSSLAGVILRMKSLHLGDVTQFPFIEAPSGRAIAD
GYQLLAELGAVDDANELTPMGTELSRLPLDPRVGRMIIEARDRKALDEVLVIASALSVQD
VRDRPMEAQQQADQAQAKFDDDKSEFSGYLKLWKWINEARGGAPSLPSARAQKAMAAHKA
PSQAFLPVAQRTVAAVQPAPAAAVPAPTHKLSNRQYEQLLRQNFISIRRLREWRDIHTQL
LTVVTEHKWQINTQPASYEQLHLSMLAGLLGNVGAKSDEEDWYLGARGIKFYKHPGAHLS
KKPGRWIIASELVETTRLFGRGIAAIEPQWLEQMGGHLLKKQLLDPHWEKKSAEVVALER
ATLYGIVVYNNRRVNFGKVDPHAAREVFIREALVGGNWETKLPFLAANQKLIAKVEELEH
KSRRQDVLVDDELIYAFYDQQLPPEVCSGHSFEAWYREESKKQPDLLKLTREELMRHEAA
GITTNAFPKTVRLGGVDCAASYLHEPGDPRDGITVTIPLFVLNQVSDERCEWLVPGMLKD
KIQALLKSLPQRPRSRFVPLPDSATRLAELLGAPERFGTGSLTDVLLKQVRDETSLDVKR
ADFKLDMLSPHLFMNFRVVDEHGRQLGHGRNLGALKAEWGAKARGAFQALAGLKLGGAAE
GSKSESNMPQALDGKAQAAIQSGVKGGAQPAQPAKPASTTPSAPSTPAGQRYTTWAFGEL
PELMEIRKAGQTLIGFPALIDGGDAVTIEVFDEPEVAAAKHRAGLRRLFALQIKDALKYL
EKNIPDLQKMAVAYMPLGTQEELRTQIIDVALDRAFLLDPLPTDEFAFKRRVEEGRGRLT
LIANEVARLAATILTEYAAAARKIKDTKNAPEATADAQQQLQRLVPKNFIAAAPWTQLAH
YARYLKAITLRLDKYRADPARDAAKLAELRPQEQRYWRLVAERKGAVDARMQELRWLLEE
LRVSFFAQELRTPQPVSVKRLDKLWAQIQS
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
ttgactgcgtccaccgcctccactcccctgcacatcgagtttccggaatccctgcccgtc
tccgcgcggcgcgacgagatcatggaggccatgcgccagcaccaggtcatcatcgtgtgc
ggtgaaaccggctcgggcaagaccacgcagctgcccaagatcgcgctggcgctgggccgg
ggcaagtgcaacgccaagccggggcaaaaaggccagctcattggccacacccagccgcgc
cgcattgctgccagcagcgtggccaagcgcatcgccgaagagctgaagaccccgctgggc
gacgtggtgggtttcaaagtgcgcttccaggaccgcctttcgcgtgatgcctccgtcaag
ctgatgaccgacggcatcttgctggccgagacgcagaccgacccgctgctccgtgcctac
gacaccatcatcatcgacgaggcgcacgagcgcagcctgaacatcgactttctgctcggc
tacatccgccagatcctgccgcgccggcccgacctgaaggtggtggtgacctcggccacc
atcgatgcggaccgctttgccaagcattttgaatctgcaaaaggccccgcgcccatcatc
atggtgtcgggccgcacattccccgtagagcagcgctaccgcccgtttgaagaaagccgc
gactatggcctcaacgaggccattgccgacggcgtggatgagttgtggcagggcaatgcg
gcgggcgacatcctcgtattcctgcccggcgagcgcgagatccgcgaggcggccgaccac
ctgcgcaagcacctgtcgcaccagccggtgatgcgcaatgccgaggtgctgccgctgttt
gcacgcctgagccaggccgagcaggaccgcatctttgacggccacacgggccgccgcatt
gtgctggccaccaacgtggccgagacctcgctgacggttccaggcgtccgatacgtcatt
gacgcaggcacagcgcgcgtcaagcgctacagtttcagaagcaaagtggagcaactgctg
gtcgagcccgtcagccaggctgccgcaaaccagcgcgccggccgctgcggccgtgtggcc
aacggcatctgcatccgcctgtacgacgaggccagcttcaacagccgcccgcgttttacc
gaccccgaaatcctgcgcagctcgctcgcaggcgtcatcctgcgcatgaagtcgctgcac
ctgggtgacgtgacgcagtttccgttcatcgaggcgccctcgggccgcgcgattgccgac
ggctaccagctactggccgaactgggcgcggtggacgatgccaatgaactcacgcccatg
ggcacagagctgtcacgcctgccgctcgatccgcgcgtgggccgcatgatcatcgaggcg
cgtgaccgcaaggcgctcgatgaggtgctggtgattgccagcgcgctcagcgtgcaggac
gtgcgcgaccgccccatggaggcgcagcagcaggccgaccaggcgcaggccaagttcgac
gacgacaagagcgagttcagcggctacctgaagctgtggaagtggatcaacgaggcccgg
ggcggcgcgcccagcctgccatcggcccgcgcgcagaaggccatggccgcccacaaggcc
ccttcgcaagcctttctgcccgtggcccagcgcacggttgcggccgtgcagcccgcgccc
gcggccgcggtgcctgcgcccacccacaagctcagcaaccgccaatatgagcagctgctg
cgccagaacttcatcagcatccgccgcctgcgcgagtggcgcgacatccacacccagctg
ctcacggtggtgaccgagcacaagtggcagatcaacacccagcccgccagctacgagcag
ctgcacctgtccatgctggccggcctgctgggcaacgtgggcgccaagagcgacgaggaa
gactggtatctgggcgcacgcggcatcaagttctacaagcaccccggcgcgcacctgtcc
aaaaagccgggccgctggatcattgcgtcggaactggtcgaaaccacgcgcctgtttggc
cggggcatcgccgccatcgagccgcagtggctggagcagatgggcgggcaccttttaaag
aagcagctgctcgacccgcattgggagaaaaagtctgccgaagtggtggcgctggagcgc
gccacactctacggcatcgtcgtctacaacaaccgccgcgtgaacttcggcaaggtagac
ccccacgccgcgcgcgaggtcttcatccgcgaagcgctggtgggcggcaactgggagacc
aagctgccgtttctggccgccaaccagaagctcatcgccaaggtcgaagagctggaacac
aagtcgcgccgccaggacgtgctggtggatgacgaactcatttacgccttttatgaccag
caactgccgcccgaggtgtgcagcggccacagcttcgaggcctggtaccgtgaggaaagc
aaaaagcagcccgacctgctcaagctcacgcgcgaagagctcatgcgccacgaggccgca
ggcatcaccaccaacgcctttcccaagacggtgcggctgggtggtgtggactgcgccgcc
agctacctgcacgagcccggcgacccgcgcgacggcatcacggtgaccattccgctgttc
gtgctcaaccaggtgagcgacgagcgctgcgagtggctggtgcccggcatgctcaaggac
aagatccaggccctgctcaaaagcctgccccagcgcccgcgcagccgctttgtgccgctg
cccgacagcgccacgcgcctggccgaactgctgggcgcacccgagcgttttggcaccggc
agcctgaccgacgtgctgctcaagcaggtgcgcgacgaaacctcgctcgatgtgaagcgc
gccgacttcaagctcgacatgctcagcccgcacctgttcatgaacttccgcgtggtcgat
gagcacggccgtcagctcggccacggccgcaacctgggcgcgctcaaggccgagtggggc
gccaaggcgcgcggcgcgttccaggcgctggcggggctcaagctcggcggtgcggcagag
ggttcgaaatctgaatcaaatatgcctcaagcgcttgatggtaaagcgcaagcagctatt
caatcaggagtaaaaggtggcgctcagcctgcccagcccgccaaaccagccagcaccacg
ccatcggccccctcaaccccggctggccagcgctacaccacctgggcgtttggcgagctg
cccgagctcatggagatcaggaaggccggccagacgctgattggctttccggcgctcatc
gacggcggcgacgccgtgaccatcgaagttttcgacgagcctgaagtggcagccgccaag
caccgcgcgggcctgcgccgcctgtttgcgctgcagatcaaggacgcgctcaagtacctc
gaaaagaacattcccgacctgcagaagatggccgtggcctacatgccgctcggaacgcag
gaagaactgcgcacccagatcatcgacgtggcgctcgaccgcgcctttttgctcgacccg
ctgcccaccgacgagttcgccttcaagcgccgcgtggaagagggcaggggccgcctcacg
ctgatcgccaatgaagttgcccgcctggcggccaccatcctcaccgaatacgcggcagcc
gcccgcaagatcaaggacaccaagaacgcgcccgaggccacggcggacgcacagcagcaa
ctgcaacgcctggtgcccaagaacttcattgccgcagctccgtggacgcaactggcccac
tacgcccgctacctcaaggccatcaccctgcggctcgacaaataccgcgccgaccccgcc
cgcgacgccgccaaactggccgagctgcgcccgcaagagcagcgctactggcgcctggtg
gccgagcgcaagggtgccgtggatgcgcgcatgcaagagctgcgctggctgctggaagag
ttgcgcgtgagcttcttcgcgcaagagctgcgcacgccccagccggtgagtgtgaagcgg
ctggacaagttgtgggcgcagattcagagctga
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