Acidovorax carolinensis NA2: CBP33_14390
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Entry
CBP33_14390 CDS
T04914
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
acid
Acidovorax carolinensis NA2
Pathway
acid03410
Base excision repair
acid03430
Mismatch repair
acid03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
acid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CBP33_14390
03430 Mismatch repair
CBP33_14390
03440 Homologous recombination
CBP33_14390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acid03400
]
CBP33_14390
DNA repair and recombination proteins [BR:
acid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CBP33_14390
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CBP33_14390
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CBP33_14390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ART49173
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Position
3084947..3086710
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AA seq
587 aa
AA seq
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MKIVARDIPPRAAWALEQAGVHPLLARLYAARGVRAKDELDDGLSRLLQPSGLKGIDTAA
RLLADAMAQNKRLMIVADYDCDGATACAVGVRGLRLLGATNVDYLVPDRVTDGYGLTASI
ARRVAERGADVLITVDNGIASVEGVAEAKALGLQVLVTDHHLPGPELPAADAIVNPNQPG
CTFESKSMAGVGVMFYVLLALRAELRARGIFDAATQPKLDPLLTLVALGTVADVVKLDAN
NRRLVAQGLRRIRAGQMPAGVAALFTAAGRKAPVATTFDFGFALGPRINAAGRLADMTLG
IECLLTDDAGRAAELAATLDGINRERREIEGGMRDQALLMAESLFQEDEEPPPAISVFDP
DFHEGVVGIVASRIKDKLHRPTFVFAASSAPGKAHELKGSGRSIPGFHLRDALDLVAKRH
PGVLLKFGGHAMAAGCTVAEEAFDVFEQALAQVAREWLDVAALTRRIETDGPLAPEYCRA
DMVDTLHREVWGQGFAPPTFSEEVQVLSQRLVGEAKNHLSIKLIHQGNPIDAIWFGHTEP
LPARVLLAFRLDVNEWKGERKVQFLVEGAQTEADSRPVLIAATNVQR
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatagtagcaagagacattcccccccgcgccgcctgggcgctggaacaggctggc
gtgcacccgctgctggcgcgcctgtatgccgcgcgcggtgtgcgtgccaaggacgagctc
gacgacggcctgtcacgcctgttgcaacccagcggcttgaaaggcatcgacaccgccgca
cgcctgctggccgatgccatggcgcaaaacaagcgcctgatgatcgtggccgactacgac
tgcgacggcgccaccgcctgcgccgtgggcgtgcgcggcctgcgcctgctgggcgccacc
aacgtggactacctcgtgcccgaccgcgtgaccgatggctatggcctcaccgcgtccatc
gcccgccgcgtggccgagcgcggcgccgatgtgctgatcaccgtggacaacggcattgcc
agcgtggagggcgtggccgaggccaaggcgctgggcctgcaagtcctcgtcaccgaccac
cacctgcccggccccgagttgcctgcggccgacgccatcgtcaatcccaaccagcccggc
tgcacattcgagagcaagtccatggccggggtcggcgtgatgttctacgtgctgctggcg
ctgcgcgccgagctgcgcgcgcgcggcattttcgatgcggccacccaacccaagctcgac
ccgctgctcacgctggtggcgctcggcaccgtggctgatgtggtgaagctcgacgccaac
aaccggcgcctggtggcgcagggcctcaggcgcatccgcgctggccagatgcccgccggg
gtggccgcgctgttcaccgccgccggccgcaaggcgcccgtggcgaccacgttcgatttt
ggcttcgctttgggcccgcgcatcaatgccgcgggccgcctggccgacatgacgctgggc
atcgaatgcctgctgaccgacgacgcgggccgcgccgccgagctggccgccacgctcgac
ggcatcaaccgcgagcgccgcgaaatcgagggcggcatgcgtgaccaggcgctgctgatg
gccgaaagcctgttccaggaggacgaagagccaccgcccgccatcagcgtattcgacccc
gattttcacgaaggcgtggtcggcatcgtggccagccgcatcaaggacaagctgcaccgc
cccacgttcgtgttcgccgccagcagcgcgccgggcaaggcgcacgagctcaagggctcg
ggccgttccatccccggctttcacctgcgcgatgcgctggatttggtggccaagcgccat
ccgggcgtgctgctgaaattcggcggccacgccatggcggccggctgcacggtggccgaa
gaagcgtttgacgtgttcgagcaggccctggcccaggtggcgcgcgaatggcttgatgtg
gccgcgctcacgcgccgcatcgaaaccgacggcccgctggcccccgaatactgccgcgcc
gacatggtggacaccctgcaccgcgaggtgtggggccagggctttgcaccgcccacgttc
agcgaagaagtgcaggtactgagccagcggctggtgggtgaggccaagaaccacctgtcg
atcaagctcatccaccagggcaaccccattgacgcaatctggttcggccacaccgagccc
ctgcctgcacgcgtgctgctggcctttcggctcgacgtgaacgagtggaagggcgagcgc
aaggtgcagtttctggtggaaggggcgcaaacggaggcggatagcaggcctgtactgatc
gctgccaccaacgttcaacgctga
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