Acinetobacter sp. BHS4: KIP84_02385
Help
Entry
KIP84_02385 CDS
T09875
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
acie
Acinetobacter sp. BHS4
Pathway
acie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KIP84_02385 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acie03019
]
KIP84_02385 (rnr)
03016 Transfer RNA biogenesis [BR:
acie03016
]
KIP84_02385 (rnr)
Enzymes [BR:
acie01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KIP84_02385 (rnr)
Messenger RNA biogenesis [BR:
acie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KIP84_02385 (rnr)
Transfer RNA biogenesis [BR:
acie03016
]
Prokaryotic type
tRNA degradation factors
KIP84_02385 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QVR68459
LinkDB
All DBs
Position
complement(488774..491191)
Genome browser
AA seq
805 aa
AA seq
DB search
MTKNWADPEAKAEAERYDNPIPSRTLILDTLEQLQTPQSHAELVDHFNIHDQKSIEALSH
RLSAMVRDGQIMKDGFKFQLVADQPTYEATVYINSKGLGTAHIDGQSDLLLPERELRLVF
NGDRVRVRQTSVDRKGKPWGFITEVLQHRVKQLIGKLSVHDGEYFIQPNNPNQHQPIPLE
KELVTHAEANVGDMLRVAIDSYPTREEFATAHIIQSMADKADTEIIIPQTILEFGLPYEF
PDEVIKEAESFKEPSAQDREGRIDLRDLALVTIDGEDARDFDDAVYAEKRPGGGYRVVVA
IADVSHYVRLDSALNEEAEERGTSVYFPHFVLPMLPEALSNGLCSLNPHVDRLCMVCDLK
LSRTGRVTGYDFYPSVMHSKARLTYTQVAQYFDGATDAIPKDRDVHKSLNTLFQLYQILK
NLRADRHAMEFETIETYMTFDELGGIKEILPRTRNEAHKLIEECMLLANVAAAEYALKHD
VPMLYRVHEAPEFSRIQKVKDFVKLLGLPFPDQPTQADYQRVIEATKDRIDAPSIHAVLL
RSMMQAYYGAKNAGHYGLAYEAYTHFTSPIRRYPDLLLHRAIKAHLKQKPYPLSGAALDD
AGEHFSQTERRADEASRSVTTWLKCHYMQQHLGDEFIGIVSAVTEFGLFVTLKDLYVDGM
IHISQLGDDFFIYDQASQNLVGQNRGQVFGLGDEVKIQVAGVNLEERKIDFQLIKQVTHA
GRVVRSRAPRTTKTTTQATEEVFSKPTVSSDGERPVHKKKEKSKPSSYTKKSGKKTSAKA
ETKSEKVKKKSKPKKKKSNAKSKAE
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaactgggctgaccccgaagcgaaagctgaagctgaacgttatgacaatcct
attccaagccgtactcttattttagatacattggaacaattgcagacaccgcaatctcat
gcagaacttgtcgatcattttaatattcatgaccaaaaaagtattgaagcactcagtcat
cgcttaagtgctatggttcgtgacggccaaatcatgaaagacgggtttaaatttcagttg
gtggcagatcaaccgacctatgaagcaactgtttatatcaatagtaaaggtttaggcaca
gcacatattgatggtcaaagtgaccttttacttcctgaacgtgaattacgtttagtcttt
aacggtgaccgagttagagtgcgacagacttcagttgatcgtaaaggcaaaccttgggga
tttatcacagaagttttacaacatcgtgttaaacaattaattggtaaattgtcggttcac
gatggcgaatattttattcagcccaacaatccaaatcagcaccagcctattcctttagaa
aaagaactggtaacacatgctgaagcaaatgttggcgatatgctacgtgtcgcaatagat
agttatccgactcgtgaagaatttgcgacggcgcatattattcaatctatggccgacaaa
gctgatacagaaattattattccgcagactattcttgagtttggcttaccttacgaattt
ccagatgaagttataaaagaagctgaaagctttaaagaaccatctgctcaagaccgtgaa
ggccgcattgatttacgagatttagcattagttacgatcgatggtgaagatgctcgagat
tttgatgatgcggtttatgctgaaaaacgtccaggtggcggttatcgtgtagttgtcgca
attgctgatgttagccattatgtacgcttagactcagccctcaatgaagaagctgaggaa
cgtggtacttcggtatacttcccgcatttcgtattaccaatgctaccagaggcattgtca
aatggcttatgctctctgaaccctcatgtagaccgcttatgtatggtctgcgacttgaaa
ctctctcgtacaggccgtgtaactggttacgatttttatccatcagtgatgcattcaaaa
gcacgtttgacctatacacaggtagcacaatattttgacggcgcaacagatgcgattcca
aaagatcgtgatgttcataaatctttaaatacgcttttccagctttatcagattttgaaa
aatttacgtgctgatcgtcatgcaatggaatttgaaaccattgaaacttacatgactttt
gatgagctaggcgggattaaagaaattttgccacgtacacgtaatgaagcacataaactt
attgaagagtgcatgttacttgctaacgttgctgcagctgaatatgcattaaaacatgat
gttccaatgttgtatcgcgtgcacgaagctccagagttctcacgtattcagaaagtaaaa
gactttgttaaattactggggctacccttccctgaccaaccaactcaagcagactatcaa
agagtaattgaagcaactaaagatcgtattgatgcaccaagtattcatgccgtcttatta
cgttcaatgatgcaagcttattatggcgcaaaaaatgcagggcactatggtttggcttat
gaagcttatacgcatttcacttcgccaattcgtcgttacccagacctattattacaccgt
gccattaaagctcacttaaaacaaaagccttatccactctctggtgctgcgctagatgat
gcaggtgaacatttctctcaaacagagcgccgtgctgatgaagcttctcgtagcgtaaca
acttggttgaaatgtcactacatgcagcagcatctaggtgatgaattcattggtattgta
agtgcggtgaccgaattcggtttattcgtgacactgaaagatctatatgtcgatggtatg
attcatattagccaactcggcgatgacttctttatttatgaccaagcgagtcaaaatcta
gtaggtcaaaatcgtggtcaagtctttggtttgggcgatgaagttaaaattcaggtcgct
ggtgtcaatctggaagaacgtaaaattgacttccagctcattaagcaagttacccatgca
ggccgagtagttcgtagccgtgcgccgcgtacgactaaaactactacgcaggcgactgaa
gaagttttcagtaaaccaactgtcagcagtgatggtgaaagacctgttcacaaaaagaaa
gaaaaaagtaagccaagttcttacaccaaaaaatctggtaagaaaacctcagcaaaagcc
gagactaaatcagaaaaggtgaaaaaaaaatctaagcctaaaaagaaaaagtcgaatgca
aaatcaaaggctgaatag
DBGET
integrated database retrieval system
