Acinetobacter sp. BHS4: KIP84_16570
Help
Entry
KIP84_16570 CDS
T09875
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
acie
Acinetobacter sp. BHS4
Pathway
acie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KIP84_16570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acie03019
]
KIP84_16570
03009 Ribosome biogenesis [BR:
acie03009
]
KIP84_16570
Enzymes [BR:
acie01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KIP84_16570
Messenger RNA biogenesis [BR:
acie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KIP84_16570
Ribosome biogenesis [BR:
acie03009
]
Prokaryotic type
rRNA processing factors
KIP84_16570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
RBM39linker
Motif
Other DBs
NCBI-ProteinID:
QVR67628
LinkDB
All DBs
Position
3448433..3451756
Genome browser
AA seq
1107 aa
AA seq
DB search
MKRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY
GAGRQGFLSMREIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISL
AGRYLVLMPNNPKGGGISRQISGSVREELKEILASLNLPRGMSVIVRTAGIGRTQEELQL
DLQHLLDLWAQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYN
FVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSID
INSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKL
REATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSI
MRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSSVRVTVLPHPHLETPHY
EIQYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHSHTHAAPAANNAANQKKAN
QAAQPAAQASAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGAVSRGQF
GQVVAPAVAEVTSAPSNNAYISQSPVKQEARENVEKDDKVQQQRPNNKKRKHKEQREQHQ
HHHNQEPQQQQVHEEVVQLSRQEQRELKRQQKRQQQDQPHAQHQNDGQQAEHAVPRRDRN
NQQRPNRPNRHRDPSVLNENQNTPAPAVVDEKQIKVDLIDAPQHEVMNTALVINVDQAQS
EIIALTPEQPVQRTEKAPVVEATQEPAPAPVVAVEETVTAEAEAPQPKAEKTQPQVQRAS
NDPRMRRREQRNAKRAKATAPSIAPSQIPTLAQYTIGSLIRHVYGEDCTVLIEQFGLVPT
FNRALQKFAEQYASTLVTEVASEAEDKKPVTRDAELPSNKPSQEAEPAPVLPLTPPKEAT
PRVANDPRERRRLAKLAAEQAFEQVKQQHSAPEEAAPVAETVEEAVVAPTTETQAPVESK
QQPLELDQQVEVAANVEETPAEPAVEAPVAKQPKAAAKAKAATEQAVEPTEAPAESESED
SKADKDKPSRPRRPRGRPPKKANPVAE
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgattaatgcaactcacgcagaagaagtccgcgttgcacttatcact
ggtaatcgtctttacgattttgatttagagaatcgtacccgagaacagaaaaaatccaat
atctataaaggccatgtaacccgcgtagaaccctctttagaagctgtttttgttgaatac
ggcgcaggccgtcaaggcttcttgtctatgcgcgaaattgctaacagttatttccaagca
gacccacgacaaacttcaaacattcgtgaacttatcactgaaggtactgaattacttgtt
caagtcgaaaaagaagaacgtggcaataaaggtgcagccctttctacctttatttcactt
gcaggacgttatttggttcttatgccaaacaacccgaaaggtggcggtattagtcgtcaa
atttcaggttctgtacgtgaagagttaaaagaaattctagcttctttaaatttaccgcgt
ggtatgagcgttatcgtacgtaccgctggtattggccgtacccaagaagaattacagtta
gacttacagcatttgcttgacctttgggcacaaatccaaggcacagcgagctctggtcct
tctccaatgctggttcatcaagaagctggtgttgttactcgtgctatccgcgattattta
cgtgatgatgttgcagaaattttaattgatagcgaacaggcttataacgaagcttataac
tttgttaaagcagtaatgccacgtcaattagacaaactcaaaacttatactttaaacgag
ccattgtttgctcattttggtattgaaagccaaattcaaactgcttacgagcgtgaagta
aaacttccttctggtggttcaatcgtgattgaccagaccgaagctttagtttcaatcgac
attaactctgcgaaatcaactcgtggacatgacgttgaagaaactgcgcttaatactaat
ttagaagcagcagaagaaattgctcgccaacttcgtcttcgtgacattggtggtttagtt
gtaatcgacttcatcgatatgactaaagagcgcaaccaacgtatggttgaagcaaaactt
cgtgaagcaacacaaagcgatcgcgcacgtattcagtttggccaactttctcgttttggc
ttaatggaaatgagccgtcaacgcttacgtccatctcttgaagaagcaacaggttatgtg
tgcccacgctgtcatggtacaggcatggttcgtgacctacgctcactttcactttcgatt
atgcgtaaagtagaagagatcgcgcttcgtgaacgtcatggtgaagtacaagtagaagtg
cctgttgaaattgcagcattcttgctcaatgaaaaacgtcatagtcttgtttatttagaa
caaacttctagtgttcgtgtgactgttttacctcacccgcacttagaaacccctcactac
gaaattcagtacaatccagatggatttgcaccatctagctacgaacgtactgaagcaact
cgttcaagtgaaaaagagttaggttatgaatcttctgaatggcatttagaagaagctgat
catagccatactcatgcagcccctgctgccaataacgcagctaatcaaaagaaagcaaat
caagcggctcaacctgctgctcaggcaagcgctcaaaaagcagcaagcccttgtgcatgg
ttagaaaacctttttgttcaaaaacaagctcaaacagttgatcaatctcgctcagcacaa
aatgctgctgccgcaattgaacaaatggtgaatactggcgctgttagccgtgggcagttt
ggacaagttgtagcaccagcagttgctgaagttacttcggctccatctaacaatgcttat
atttctcaatctcctgttaagcaggaagcacgtgagaatgttgaaaaagacgataaagta
caacagcagcgtccaaacaacaaaaaacgtaagcacaaagagcaacgtgaacaacatcaa
catcaccacaatcaagaaccacagcaacaacaggttcatgaagaggttgtacagttatca
cgccaagagcaacgtgaattaaaacgtcaacaaaagcgtcaacaacaagatcagccgcat
gcgcaacatcaaaatgatgggcaacaagctgaacatgctgtaccacgtcgtgaccgtaat
aatcaacaacgtccaaaccgcccgaatcgccaccgcgatccaagcgtattaaatgaaaat
caaaatacgccggcaccagcagttgttgatgaaaaacaaattaaggttgatttgattgat
gctccacagcatgaagtcatgaatacagccttagtcatcaatgttgatcaagcacaaagc
gaaattattgctttaacgcctgagcaacctgttcaacgtactgaaaaagcacctgttgtt
gaagctactcaagaaccagctccagcaccagttgtggcagtggaagagacggtaactgct
gaagcagaagctcctcaaccaaaggctgagaaaactcaaccgcaagttcaacgtgcaagt
aatgatcctcgtatgcgtcgccgtgaacaacgcaatgcaaaacgtgctaaagctactgca
ccatcaattgccccatcgcaaattccaacgttggcgcaatatacaattggtagcttgatc
cgtcatgtttacggtgaagactgcacagtactgattgaacagtttggtttagttccaaca
ttcaatcgtgcattgcagaaatttgcagagcaatatgcaagtactctagtgactgaagtc
gcatctgaagctgaagacaaaaagcctgttactcgtgatgccgagcttccaagcaataag
ccttcacaagaagcagaacctgcgccagtacttccgttgacgccaccaaaagaagcgaca
ccacgtgttgctaatgatccgcgtgaacgccgtcgtttagcgaaacttgcagctgaacaa
gcttttgagcaagttaaacaacaacattctgcaccagaagaagctgcccctgtagctgag
actgtggaagaagccgttgttgctcctactactgaaacacaagcacctgttgaatcaaaa
caacaaccgcttgagcttgatcagcaagttgaagtagcagctaatgtagaagagacacca
gctgaacctgcagtagaagctccggttgcaaaacagccaaaagcagctgcaaaagccaaa
gcagctacagaacaagctgtagagccaactgaagctcctgccgagagtgaatcggaagat
tctaaagctgataaggacaaaccaagtcgtcctcgtcgccctcgcggccgtccaccaaag
aaagcaaatcctgtagctgagtaa
DBGET
integrated database retrieval system
