Acinetobacter sp. LoGeW2-3: BS636_09115
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Entry
BS636_09115 CDS
T10253
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
acig Acinetobacter sp. LoGeW2-3
Pathway
acig02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
acig00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BS636_09115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acig03021
]
BS636_09115
Transcription machinery [BR:
acig03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BS636_09115
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
XTBD
Motif
Other DBs
NCBI-ProteinID:
ATO19800
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Position
complement(1904370..1906256)
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AA seq
628 aa
AA seq
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MSDMTSPTSQVAALISRGKEQGYLTFAEVNDHLPDSITESEQIEDIIQMLNDVGIPVHDR
APESDDTMFEDTAEAADEVAEEEAAAVLASVENEPGRTTDPVRMYMREMGTVELLTREGE
ISIAKRIEEGIRDVLHSIAYWPNAVEVVLQEYKDYEAGERRLADLLSGYLDPESDEEIPE
VLEEVAEIEEDEEATTKSTKDVKLDDEEDEEESDSDDDSEGDSGPDPEIAKVRFAELSDA
WKNTKAVIEKHGRNSKEAEDALQALATVFMMFKFTPRLFDIISEMIRGTHDQIRGAEREV
MRYAVRRGRMDRTQFRTSFPGQESNPAWLDEQIAKAPADQKGYLEKVRPDVLAFQQKIAD
IEKELDLKVRDIKDIAKRMAVGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ
EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKINRV
SRQLLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDS
NITSPVDAATSEGLKEATREVLENLTEREAKVLKMRFGIDMPTDHTLEEVGKQFDVTRER
IRQIEAKALRKLRHPSRSEHLRSFLEND
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatatgacttcccctacttcacaagtagcggctctgattagccgaggcaaagaa
caaggttatttaaccttcgctgaggttaacgatcatctcccagactcgatcacagaaagc
gaacagattgaagatatcattcagatgctgaatgacgtcggcattccggtacatgatcgc
gcgcctgaatctgatgatacgatgtttgaggacactgcagaagctgccgatgaagttgca
gaagaagaagctgcagcagtacttgcatctgtagaaaatgagccaggtcgtacaactgac
cctgtgcgtatgtatatgcgtgaaatgggtaccgttgaactgttaacgcgtgaaggcgaa
atcagcattgcgaaacgtattgaagaagggatccgtgacgttcttcactcaattgcttac
tggccgaatgctgtagaagttgtactccaagaatacaaagattatgaagcgggcgaacgc
cgccttgctgaccttctgtcaggttacctagaccctgaatcagatgaagaaattccagaa
gtactggaagaagtcgctgaaatcgaagaagacgaagaagcaacgaccaagtcaaccaaa
gatgtaaaactggatgatgaggaagatgaagaagagtctgacagtgatgacgattctgaa
ggtgactcaggtccagatccagaaatcgctaaagtgcgttttgctgaactgtcagatgcc
tggaaaaataccaaagctgtaatcgaaaagcatggtcgcaacagcaaagaagcagaagac
gcactacaagctttggcgactgtgttcatgatgttcaaattcacaccgcgtctgttcgat
atcatttctgaaatgattcgtggcacacatgaccagatccgtggtgcagaacgtgaagtg
atgcgttatgcagtgcgtcgtggtcgtatggatcgtacccagttccgtacttctttccca
ggtcaggaatcgaatccagcctggttggatgagcaaatcgcgaaagcacctgctgatcaa
aaaggctatttagaaaaagtacgtcctgacgtgttggcattccagcaaaaaattgccgac
atcgaaaaagagcttgatctgaaagttcgtgacatcaaagacatcgctaaacgtatggcg
gtgggtgaagcgaaagcacgtcgtgccaagaaagaaatggtggaagcgaacttacgtctg
gtaatttcgattgcgaaaaaatacaccaaccgtggcttgcagttcctggatctgattcag
gaaggtaacatcggtctgatgaaagcggttgataaatttgaataccgtcgtggttacaag
ttctcgacttatgctacctggtggattcgtcaggcaattacccgttcaatcgcggatcag
gcacgtaccatccgtattccagtacacatgatcgaaacgattaacaagatcaaccgtgta
tctcgtcaattacttcaggaaatgggtcgtgaacctactccggaagaactgggcgaacgt
ctggaaatggacgaagtgaaggttcgtaaagtacttaaaatcgcgaaagaaccgatttcg
atggaaactccaatcggtgatgatgaagattcgcatttgggtgacttcattgaagacagc
aacatcacctctcctgttgatgctgcaacttcagaaggtctgaaagaagcgacgcgtgaa
gtcctagaaaacttgactgaacgtgaagcgaaagtcctgaaaatgcgtttcggtatcgat
atgccaacggatcatactttggaagaagtaggtaaacagttcgacgtaactcgtgaacgt
atccgtcagattgaagcgaaagcattgcgtaaattacgtcatccttctcgttctgaacac
ctgcgttcattccttgaaaatgactaa
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