Acidianus sp. HS-5: HS5_28290
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Entry
HS5_28290 CDS
T07980
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
acih
Acidianus sp. HS-5
Brite
KEGG Orthology (KO) [BR:
acih00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
acih03016
]
HS5_28290
Enzymes [BR:
acih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HS5_28290
Transfer RNA biogenesis [BR:
acih03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HS5_28290
Prokaryotic type
tRNA splicing ligases
HS5_28290
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BDC19939
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All DBs
Position
2557582..2559021
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AA seq
479 aa
AA seq
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MVDVKRVNTYEWRIDKSSCMRVPVTVFADDVLIDKMKQDLTLKQATNVACLPGVQEGVYV
LPDGHQGYGFPIGGITATAIEEGGVVSPGGIGYDINCGVRLLRTNLDYEDVKPKLKDLVE
ELHRNVPSGVGSEGRVKLTTQQLDEVLAEGVKWAVDKGYGWAEDMEHIEQHGSWDLADPS
KVSDIAKKRGASQLGTLGAGNHFLEVQVVDKIYDERIAKAIGITHEGQVMVMVHTGSRGL
GHQVASDYLQIMERAMKKYNISVPDRELAAIPFESREGQDYFHAMVSGANFAWSNRQLIT
HWVRESFGNVFKVDPEKLDLHIIYDVAHNIAKIEEYDVEGKRKKLLVHRKGATRAFPPGS
TEIPAEHRNIGQIVLIPGSMGTASYVMAGIPEGRRTWYTAPHGAGRWMSREAAVRSYPAN
TVVENLEERGIIVRATTRRVIAEEAPGAYKDVDRVAKVADAVKIAKLVVRLRPIGVTKG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggttgacgtaaaaagagtgaatacttacgaatggagaatagacaagagtagctgcatg
agagtcccagttacggtatttgcggatgatgttctaatagataaaatgaaacaggactta
acattaaagcaggcaacgaacgtagcttgtctgccaggtgttcaagaaggagtttatgtc
cttccggatgggcatcaaggatacggctttcctataggaggaataactgctactgcaatc
gaggaaggaggagttgtaagccctggaggaataggctatgatattaattgtggagttaga
ttactcagaactaacctagactacgaggacgttaagcctaaattaaaagacctagtagag
gaactacataggaacgtacctagcggagtaggtagtgaaggtagagtaaaattaacaact
caacaactggatgaagttttggctgaaggagtaaagtgggcggtggacaaaggctacgga
tgggcagaggatatggagcatatagaacagcatggaagttgggatcttgcagatccttct
aaagttagcgatatagcaaagaaaagaggggcttcacaattaggtactttaggtgcaggg
aatcacttcttagaggttcaagttgttgacaagatttacgatgagaggatagccaaagcc
ataggaataacacatgaagggcaagtaatggtaatggttcatactgggtctagaggatta
ggtcaccaagttgctagcgattatttacaaataatggagagagcgatgaagaagtataat
atttcagtaccagatagagaattagcagcaataccctttgaaagcagagaaggacaggac
tacttccacgcaatggtatctggagcaaactttgcttggagtaacaggcaattaataacc
cattgggtcagagaaagcttcggaaacgtatttaaagtagatcctgaaaagctggacctt
cacattatttacgatgttgctcacaatatagctaagattgaggaatatgacgtagaagga
aagaggaaaaaactattagttcacagaaaaggagcaacgagggcttttccaccaggcagt
acagagattccagcagagcatagaaatataggtcaaatagtccttattccaggaagcatg
ggtactgcaagttacgtaatggcgggaattccagaaggaagaagaacttggtatactgca
cctcatggtgcaggtagatggatgtctagagaagcagctgtaagaagttacccggcaaat
actgtagttgagaatttagaagaaagaggaataattgttagagcaacaactaggagagtt
attgctgaagaagctcctggagcctataaagacgttgatagagtggctaaagttgcagat
gcagttaaaatagcaaaattagttgtaagattaagaccaataggtgtgaccaagggatga
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