Acidiferrobacter sp. SPIII_3: C4901_00425
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Entry
C4901_00425 CDS
T05469
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
acii
Acidiferrobacter sp. SPIII_3
Pathway
acii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4901_00425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acii03019
]
C4901_00425
Enzymes [BR:
acii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C4901_00425
Messenger RNA biogenesis [BR:
acii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4901_00425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AWP21999
UniProt:
A0A2Z3QVM4
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All DBs
Position
86608..88038
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AA seq
476 aa
AA seq
DB search
MNDTHLTQQAFSGLGLPEPLLAGVLGAGFTHCTPIQAATLPKALAGHDVAGQAQTGTGKT
AAFLLAVFNRLLTVSPPPDRRPNQPRALILAPTRELAIQIHKDALVLGQGCAQSVQLAYG
GTGYESQRKAIEEGVDILIGTPGRLIDYFKQHVFDLRALEVMVLDEADRMFDLGFIKDIR
YLLHRMPPVDKRLSLLFSATLSYRVMELAYEHMNNPELVRIEAEKITAERVRERLYHVGQ
EEKLPVLVGLLRSEQVSRALVFTNTKHAAERVQGWLAANDFGAAVLSGDVPQQKRQSLLA
DFQGGHFPVLVATDVAARGLHIPDVSHVFNYDLPQDAEDYVHRIGRTARAGAAGEAVSLA
CDEYAFSLMDIEAYIGHKIPVERVTDDLIVSLRRPAHKPPRERVGHHARSRGESAPRDRA
HRHSSGRPREQARAPQRPAQAASPAPKPAPSRPAETRPAEPVRPRGLKTPEKPVLG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatactcaccttacccagcaagcgttttccggcctcgggttgccggaaccactc
ctcgccggagtcctcggcgccgggttcacccactgcacacccatccaggccgccaccttg
cccaaggcgctcgcgggccacgacgtggccgggcaggcccagaccgggaccggcaagacc
gcggcctttcttctggcggtcttcaaccgcctcctgacggtgtcgccgcctccggatcga
cggccgaaccagccgcgcgccctgatcctcgcgcccacgcgcgaactggccatccagatc
cacaaggatgccctggtgctgggtcaaggatgcgcccagagtgtccagctcgcctatggc
gggaccggttacgagagccagcgcaaggccatcgaggagggcgtcgatatcctcatcggc
accccgggacgcctcatcgactatttcaagcagcacgtctttgatctgcgcgcgctggag
gtgatggtcctggacgaggccgaccgcatgttcgatctcggcttcatcaaggacatccgc
tacctcttgcatcgcatgccgccggtcgacaagcgcctgagcctgctgttttcggcgaca
ttgtcctatcgcgtcatggagcttgcctacgagcacatgaataaccccgagctcgtgcgc
atcgaggcggaaaagatcaccgccgagcgcgtgcgcgagcggctctatcacgtggggcag
gaggagaagcttccggtattggtcgggcttctgcgtagcgagcaggtgtcgcgggcgctg
gtgttcacgaataccaagcatgccgccgagcgcgtgcaggggtggctcgctgccaatgat
ttcggggccgcggtgctttccggggatgtcccgcagcaaaaacgtcagagtctgctcgcg
gatttccagggggggcattttccggtcctggtggccaccgacgtggcggcgcgcggtctg
cacataccggatgtgagccacgtcttcaattacgatctcccgcaggacgccgaggattat
gtgcatcgcatagggcggacggcgcgcgccggggccgccggcgaggcggtgagcctggcg
tgcgacgagtacgccttctcgctcatggatatcgaggcctatatcggtcacaagatcccg
gtggagcgcgtcacggacgacctgatcgtctccctgaggcgcccggcccacaagcccccg
cgcgagcgcgtcggccatcatgcacgatcacgtggcgagtccgccccgcgcgatcgcgcc
catcgccattcgtccgggcgaccccgcgagcaggcgcgcgctccgcaacgtcccgcgcaa
gcggcctctccggcccccaaaccggccccttcccggcctgccgagacccggcccgcggag
ccagtgcggccgcgcggtctcaagacccccgagaagccggtcctcggttag
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