Acidiferrobacter sp. SPIII_3: C4901_04685
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Entry
C4901_04685 CDS
T05469
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
acii
Acidiferrobacter sp. SPIII_3
Pathway
acii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4901_04685 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acii03019
]
C4901_04685 (pnp)
03016 Transfer RNA biogenesis [BR:
acii03016
]
C4901_04685 (pnp)
Enzymes [BR:
acii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
C4901_04685 (pnp)
Messenger RNA biogenesis [BR:
acii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C4901_04685 (pnp)
Transfer RNA biogenesis [BR:
acii03016
]
Prokaryotic type
tRNA degradation factors
C4901_04685 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
RNase_II_C_S1
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
AWP22726
LinkDB
All DBs
Position
889058..891142
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AA seq
694 aa
AA seq
DB search
MGKITKTFPYGNHTVKIETGEIARQATGAVMASMGDTVVQVTVVGMRQSAPDRDFFPMTV
DYQERSYAAGRIPGGFFKREGRPSEKEILTSRLIDRPIRPLFPKSFTNEVQIIATVMSLD
PDIDPDIISLIGASAALSLSGMPFKGPLGAARVGYRDGQYLLNPGMSDLATSALDLVVAG
TRNAVLMVESEAKVLPEDVMLGAVLFGHEQMRAVIQAIDELVAEAKVQPWDWTPPAKDAG
LATVLATAIGAELTAAYQIREKLPRQDRVAELRDKAVAELAGEAPKPNADQVLAAFGALE
KRIVRGRILSGEPRIDGRDNKTVRPITIRTGVLPRTHGSALFTRGETQALVVTTLGTGRD
AQMIDALEGERKDPFMLHYNFPPSSVGETGRVGSPKRREIGHGRLAKRAIAAVLPDLAEF
PYVLRVVSEITESNGSSSMATVCGTSLSLMDAGVKTKAPVAGIAMGLIKEDDRFAVLTDI
LGDEDHLGDMDFKVAGTAEGVTALQMDIKIEGINREIMDTALKQARDGRLHILGIMNGAI
GEARQEMSEYAPRIITFKINPEKIRDVIGKGGATIRALCEETGATIDIDDDGVVKIASVD
NAAGQEARHRIEQITAEVQVGMIYEGRVAKLMDFGAFVTILPGKDGLVHISQISHERVEN
VSEKLAEGQTVRVKVLEVDKQGRIRLSMKAVEGG
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
ttgggtaaaatcacaaagacgttcccgtatggcaaccatacggtcaagatcgaaaccggg
gagattgcccgccaagccacgggcgccgtcatggccagcatgggtgacacggtcgtgcag
gtcacggtggtgggcatgcggcagtccgcgcccgatcgcgatttctttccaatgaccgtg
gattaccaggagcgctcctacgccgccggacgtatccccggaggatttttcaagcgcgag
gggcgcccctcggaaaaggaaatcctgacctcccgcctcatagaccgcccgatccgcccg
ctgtttccgaagtcgttcaccaatgaagtacagattatcgccaccgtgatgtcgctggat
cccgatatcgatcccgatatcatctcgctcatcggggcgtcggccgcgctgtcgctttcg
ggcatgccgttcaagggtcccttgggggcggcgcgcgtgggttatcgcgatggccaatac
cttctgaacccggggatgtcggatctcgccacctcggcgctcgatctggtggtggccggc
acacggaacgccgtcttgatggtggagtcggaggccaaggtcctgcccgaggatgtgatg
ttgggggcggtgctgttcggccatgagcagatgcgcgccgtgatccaggccatcgacgag
ttggtggccgaggccaaggtgcagccttgggactggacgccgccggcgaaggatgccggg
cttgccacggtgcttgccaccgcgatcggcgccgagctcacggccgcctatcagatccgc
gagaagctgccgcgccaggatcgcgtggcggagttgcgcgacaaggcggtggcggagctt
gccggagaggccccgaagcccaatgccgatcaggtgctcgcggccttcggggcgctcgag
aagcgcatcgtgcgcgggcggatcctgagcggtgaaccgcgtatcgatgggcgcgacaac
aagaccgtgcgcccgatcacgatccgcaccggtgtgctgccacgcacgcatggttcggcg
ctctttacgcgcggtgagacccaggcgctggtggtcacgacccttggtacgggacgcgac
gcgcagatgatcgatgccctcgagggcgagcgcaaggacccgttcatgctgcattacaat
ttcccgccatcctcggtgggcgagaccgggcgggtgggcagccccaagcgccgcgagatc
ggccatgggcggttggctaagcgcgcgatcgcggcggtgctgccggacctggcggagttc
ccctacgtattgcgcgtcgtttccgagatcaccgagtcgaacggttcgagttcgatggcc
acggtgtgcggaaccagcctgtctctgatggatgccggcgtgaagaccaaggcgccggtg
gcgggtatcgccatggggctcatcaaggaagacgaccggttcgcggtgctgactgatatc
ctgggcgacgaggatcacttgggcgacatggacttcaaggtggccgggaccgccgagggc
gtgaccgccttgcagatggacatcaagatcgaggggatcaaccgcgagatcatggatacc
gccctgaagcaggcgcgcgacggccggctgcatatcctcggcatcatgaacggtgcgata
ggcgaggcgcgccaggagatgtccgagtatgcgccgcgcatcatcaccttcaagatcaat
ccggaaaagatccgcgatgtgatcggcaagggtggcgccacgatccgcgcgctgtgcgag
gagaccggtgcgaccatcgatatcgatgacgacggggtcgtgaagatcgcgtccgtggac
aatgccgcgggccaggaggcgcgtcaccgcatcgagcagatcacagccgaggtgcaggtg
ggcatgatatatgaagggcgggtggcgaagctcatggacttcggggcattcgtcaccatc
cttccgggcaaggacgggctcgtccatatctcgcagatatcccatgagcgtgtcgagaac
gtgagcgagaagctcgccgagggtcagacggtacgcgtcaaggtcctggaggtcgacaag
cagggccgcatccgcttgagcatgaaggcggtggagggcggctag
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