Acidiferrobacter sp. SPIII_3: C4901_11920
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Entry
C4901_11920 CDS
T05469
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acii
Acidiferrobacter sp. SPIII_3
Pathway
acii03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C4901_11920 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acii03400
]
C4901_11920 (mfd)
Enzymes [BR:
acii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4901_11920 (mfd)
DNA repair and recombination proteins [BR:
acii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C4901_11920 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_22
FANC_SAP
ERCC3_RAD25_C
DUF7267
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AWP25024
UniProt:
A0A2Z3R5E3
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All DBs
Position
2380283..2383786
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AA seq
1167 aa
AA seq
DB search
MSVPELHTIHSPLNPPAPSGSEHWVGLHASARGLALARAAEAGRLLIVVTRDVRSRERLE
DEIAFYRDPNGPPILTFPDWECLPYDRFSPHPDILSERLATLAALPHLTHGLVLTAAATL
MHYLPPASHLLGHSFLLQVGDRLDIERFRERLVQAAYNAVGQVMEAGEFAIRGGLIDLFP
MGAGRAYRIDLFDDVVESIRTFDPETQRSQETLPEIRVLPAREHPLTTDAIQTFRSNYRA
AFAGDPRASLIYREVSEGRSPAGIEYYLPLFFAEIATFADYLPAHAALVLMEGARAQTEH
FERETAERYEASRGHIERPVLPPDRLFLTAAGLKDRLERFPEISLDAEGAGIVRHFATRE
PPSLPQDTHAPEPYAALLAALAAGTRRTLIVAEAAGRREALREALTAHGYRPQSFDSWHA
FVLDQAPLGLMSAPLDRGLELDEPALRVIVESQLYGERAQQRRRRVKTRDRQTLIKGLGE
LHTGDAVVHEDHGVGRYLGLVRLSVSDIENEFLALEYAGGDKLYVPVTDLHLLGRYTGTD
PEHAPLHKLGNEAWDKAKRRAEEKARDAAAELLEIYARRAARPGHAFAARGPEYARFADA
FPFEETPDQTRVIAEVLTDMESPRPMDRLVCGDVGFGKTEVAMRAAFLAVQDHRQVAVLV
PTTLLAQQHYQNFRDRFADLPVEIELLSRFRTHQEIEEALRRLESGRVDIVIGTHRLLQE
DVRFQALGLVIVDEEHRFGVRQKERMKALRAHVDILTLTATPLPRTLNMALAGIRDVSLI
GTPPQDRLSIKTFVTPWDTALIREACLREVRRGGQVYFLHNDVRSMARREHELKALLPEI
DIRVAHGQMPERELERVMLDFYHQRFHILLCSTIIETGIDVPTANTIIIERADRFGLAQL
HQLRGRVGRSRHRAYAYLLTPDPAALTADARKRLDAIASLEDLGVGFALASHDLEIRGAG
ELLGESQSGQINEVGFGLYSELLERAVATLKAGREGVGESALFTRPTDIELHVPALLPED
YCPDPHLRLVFYKRITSAASDEELDDLAGELADRFGTPPKATTRLFRLARLRRLARPLGI
TRIDAGPKGARLQFTPNPALDPADLIALMQAAPRQYRLDGPNGLRVQVEWTDPDTRIDGI
MALVARLASGAQPMKPPAQTPSRPRAR
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtccccgagttgcacacaatccattcccccctgaacccgccggcaccgtctgga
tccgagcactgggtggggctccatgccagcgcccgaggattggcgctggcgcgcgccgcc
gaggccgggcgcctccttatcgtcgtcacgcgggacgtgcgttcgcgcgaacgactggaa
gacgagatcgccttctaccgcgacccgaacgggccaccgatcctcaccttcccggactgg
gagtgtctgccatacgaccgcttttcgcctcatccggacatcctatcggaacgcctggcg
acactcgccgccctgccgcacctcacccatggcctggtgctcacggctgcggccacgctc
atgcactatctgccgccggcctcgcacctgctcggccacagcttcctcctgcaagtcggc
gacaggctcgatatcgaacgctttcgcgagcgcctcgtgcaggccgcctataacgccgtg
ggtcaggtcatggaggccggtgaattcgccatccgcggcggactcatcgacctgttcccc
atgggggccggccgcgcctatcgcatcgacctcttcgacgatgtggtggaatcgattcgc
accttcgaccccgagacccagcgctcgcaggagaccctgccggagatacgcgtattaccg
gcacgcgaacacccgctcacgactgatgccattcagaccttccggtcgaattatcgggcg
gcgttcgccggcgacccgcgcgcaagcctcatataccgcgaggtgagcgaaggtcgcagt
ccggcgggcatcgaatattatctgccgctcttttttgcagagatcgcgaccttcgccgac
tatctgccggcgcatgcagcgctcgtgctcatggaaggggcacgcgcgcagaccgagcac
ttcgaacgggaaacggcggaacgctatgaggcctcccgcggacatatcgaacggccggtg
cttccacccgaccggttgtttctgacggccgccggactcaaggatcgcctggagcggttt
cccgagatctcgctcgatgccgaaggggccggcattgtccggcacttcgcaacccgcgaa
ccaccgtctttgccgcaagacacccacgcccccgagccctatgcggcgttgcttgcggcg
ctcgctgccggtacgcgacgcacgctcatagtcgccgaggcggccggccgacgcgaggcc
ttgcgcgaagcgctcaccgcccacgggtaccgtccgcagagcttcgattcgtggcatgcc
ttcgtcctggatcaggcgccgctcggcctcatgtccgcgcccctcgaccgtgggctagag
ctcgatgaaccggcgctgcgcgttatcgtcgaatcgcaactctacggtgagcgcgcgcaa
cagagacgacgacgcgtaaagacccgcgatcggcagaccctcataaaagggcttggcgaa
ctgcacaccggggatgctgtggtgcacgaggatcatggcgtgggtcgctacctcggactc
gtgagactttcggtctccgatatcgaaaacgagtttctggcgctcgaatatgcgggcggc
gacaaactctatgtgccggtgacggacctccacctcctcggccgctacaccggcaccgat
cccgagcacgcgcccctgcacaaactcggcaacgaggcctgggacaaggccaagcgccgc
gccgaggaaaaggcgcgcgatgccgcagccgagctcttggagatctacgcccgccgtgcc
gcgcgaccgggacatgcatttgcagcgcgcggccccgagtacgcgcggttcgcggacgcc
tttccgttcgaagagacccccgaccagacacgcgtcatagccgaggtcttgaccgacatg
gaaagcccgcggcccatggatcgcctggtatgcggggacgtcggcttcggcaagaccgag
gtggcgatgcgcgcggcgttcctcgccgtccaggatcatagacaggtcgcggtcctcgtg
cccaccacgctgcttgcccagcagcattaccagaactttcgtgaccgcttcgccgatctc
cccgtggagatcgaactcttgtcgcgatttcgcacgcatcaggagatcgaggaggccctg
cgccgcctcgagagcggccgcgtcgacatcgtcataggaacgcacaggctcttgcaagaa
gacgtgcgcttccaggcgctcggacttgtcatcgtcgacgaggagcatcgcttcggggtc
cggcagaaggagcgcatgaaggcgctacgcgcccacgtcgacatcttgacactgaccgcg
acccccttgccgcgcaccttgaacatggcgctcgccgggatacgcgacgtgtccttgatc
ggcacgccaccccaggaccggctatcgatcaagaccttcgtgaccccgtgggatacggcg
ctgatccgcgaggcgtgcctgcgcgaagtacgccgtggcggccaggtctatttcctgcac
aacgacgtgcgttcaatggcgcggcgcgagcatgaactgaaggccttgctgccggaaatc
gacatccgcgtcgcccacgggcagatgccggagcgcgaactcgagcgcgtcatgctcgac
ttttatcatcagcgctttcacatcctgctgtgcagcaccatcatagagaccggcatcgac
gtcccgaccgccaacaccattatcatcgaaagggccgaccgcttcggtctggcccagctc
caccagctgcgcggacgcgtcggtcgttcacgccatcgggcctacgcctatcttctgacc
cccgatcccgcggcgcttaccgccgatgcccgcaagcgcctcgacgcgatcgcctccctg
gaagacctcggggtgggcttcgcgctggcctcgcacgatctcgagatccgcggggccggg
gagcttctcggggaatcgcagagcggtcagatcaacgaagtgggctttgggctctacagc
gaactcctggagcgcgcggtcgcgaccctgaaggccggacgcgagggcgtcggcgaatcc
gcgctcttcacccgcccgaccgacattgagttacacgtgccggccttgctccccgaggac
tattgccccgacccgcacctgcggctcgtattctacaagcgcattacgagcgccgcgtcc
gacgaggaactagacgacctggccggcgaactggcggaccgcttcgggacacctcccaag
gccaccacccgcctctttcgtctcgcgcgcctaagacgtctcgcccggccgcttggcatc
acccgcatcgatgccggtcccaagggcgcgcgcctccagtttacgccaaacccggccctg
gacccggcagacctcatcgcgctcatgcaagcggcgccccggcaataccgtctggacgga
cccaacggcctgcgcgtccaggtcgagtggaccgatccagatacccgtatcgacggtatc
atggcgctcgtcgcccgtctcgcgtccggggcacagcccatgaaacccccagcccagacc
ccatcgcgcccgcgcgcgcgctaa
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