Acidiferrobacter sp. SPIII_3: C4901_16930
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Entry
C4901_16930 CDS
T05469
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
acii
Acidiferrobacter sp. SPIII_3
Pathway
acii03420
Nucleotide excision repair
acii03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C4901_16930
03430 Mismatch repair
C4901_16930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acii03400
]
C4901_16930
Enzymes [BR:
acii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4901_16930
DNA repair and recombination proteins [BR:
acii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C4901_16930
MMR (mismatch excision repair)
Other MMR factors
C4901_16930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AWP24793
UniProt:
A0A2Z3R434
LinkDB
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Position
complement(3360330..3362453)
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AA seq
707 aa
AA seq
DB search
MESSFVDGLNEAQREAVTAAPGPMRILAGAGSGKTRVLTHRIAWLVDRGASPFSFLAVTF
TNKAASEMRRRVEGLLRQSVSGLWIGTFHGLSHRFLRAHWREAGLPEAFQIIDSDDQQRL
VKRLMRAQALDEARYPPRMVQAFINGHKEAGRRARKVEALADPTQRALLQVYQAYETLCR
EQGLVDFAELLLATLEVMRGHPAVREHYQRRFRHTLVDEFQDTNLVQYEWLRLFGAGGHL
FVVGDDDQSIYGWRGAEVENILRFERDHPGTRTIRLEQNYRSTGRILEAANAVIAHNAKR
LGKTLWTAGREGRPVAIYAAYSGVDEAQFVIERIRRRLSEDGRPRDVAILYRSNAQSRLF
EELLVRAGIPYRVYGGLRFFDRAEVKDALAYLRLALNRDDDTAFERVVNVPTRGIGARTV
EGLRAKARGDGMSLWAAAVALVTDGGLSGRAAAAVRGFVGLIERLSADAAVTPLDTLIET
ILKATGLLDFYREEGRERGEARGENLEELVSAARFFMAEEHEGQPVPEFLAHAALEAGEG
QAGEGQDSVQLMTLHAAKGLEFPVVFLTGLEEGLFPHERSLYDEARLEEERRLCYVGITR
AMRELTLSYAETRRLHGEDRYSPPSRFLAEIPDHLLDHVRPRLAAVTPSPVSPAGGPSIG
GRVAHATFGEGVIIDSEGHGAQARVQVQFAACGVKWLVLAYAGLTIL
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggaatcttcgttcgtcgacggcctcaacgaggcccagcgcgaggcggtcacggccgcc
cccggccccatgcgcatcctggcgggcgcgggcagtggcaagacgcgcgtcctcacccac
cggatcgcctggctcgtggaccggggggcatcgccattttcctttctcgccgtgaccttt
accaataaggccgcctcggagatgcgccggcgcgtagaggggctcttgcggcagagtgtc
tctggtctgtggatcggcacctttcatggtctctcgcaccgcttcctgcgcgcccactgg
cgggaggccggtcttcccgaggcgtttcagatcatcgatagcgacgatcagcagcgcctg
gtcaagcgtctcatgcgtgcccaggcgctggatgaggcgcgctacccgccacgcatggtc
caggcgttcatcaatggccataaggaggccgggcgacgggcgcggaaggtggaggcgctc
gccgatccgacgcagcgcgcgctgctccaggtctaccaggcctacgaaaccttgtgccgc
gagcagggcctcgtcgacttcgcggagctcctgctcgccacgctcgaggtgatgcgcggc
catccggcggtacgcgagcattaccagcggcgcttccggcacacgctggtcgacgaattc
caggacaccaacctcgtccagtatgaatggttgcggttgttcggcgccggcggccatctg
ttcgtggtgggcgacgacgaccagtccatctacgggtggcgcggcgccgaggtcgagaac
atcctgcgcttcgagcgcgaccatccgggtacgcgcaccatccggctcgaacagaactac
cgttccaccgggcgtatccttgaggccgccaacgccgtgatcgcgcacaacgccaaacgc
ctcggcaagaccttgtggaccgccgggcgcgagggccgcccggtggccatttatgccgcc
tacagcggggtggacgaggcacaattcgtcatcgagcgcatccgcaggcggctttccgag
gacggacgtccgcgcgatgtcgccatcctatatcgttccaacgcccagtcgcgcctgttc
gaggagctgctcgtgcgcgccggcataccctatcgcgtctacgggggactacggttcttc
gaccgcgccgaggtcaaggacgccttggcctacctgcgattggccctgaatcgcgatgac
gacacggccttcgagcgcgtggtcaacgtgccgacgcgcggtatcggggcgcgtaccgtc
gagggcctgcgcgccaaggcccggggcgacgggatgtccttatgggcggcggcggtcgcg
ctcgtgacggacggcggcctgagcggccgggcggccgcggcggtgcgcggtttcgtgggc
ctgatcgagcggctgtcggcggacgccgcggtcacgcccctggataccttgatcgagacc
attctcaaggcgacaggcctgctcgatttctatcgcgaggagggtcgcgagcgcggcgag
gcgcgcggcgaaaacctggaagagttggtgtcggcggcgcgatttttcatggccgaggag
cacgaagggcaaccggtcccggagttcctggcgcatgccgcgctcgaggccggggagggg
caggccggggaggggcaggactcggtccaactcatgaccctgcatgccgccaagggtctc
gagttcccggtggtgttcctgaccggcctcgaggaggggctgttcccgcatgaacgctct
ctttatgacgaggcgcgcctggaggaggagcgccggctctgttacgtcgggatcacgcgc
gccatgcgcgagcttaccctgagctatgccgagacccggcgcctgcacggcgaggaccgc
tattcaccgccgtcgcgattcctggccgagatccccgatcacctcctcgatcatgtccgc
ccgcggctggccgcggtcaccccgtccccggtatcgccggccggtgggccgtcgatcggt
ggccgcgtggcgcacgcgacctttggcgagggggtgatcatcgacagcgagggccacggc
gcgcaggcgcgcgtgcaggtgcagttcgcggcctgcggtgtaaagtggttggtcctggcc
tatgccggcctgacgattctttag
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